miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28171 3' -56.5 NC_005887.1 + 15564 0.7 0.353419
Target:  5'- gCGcGCGACCGCGcucgauucgcugaUcgccgaagcugagacGCAGCGCACGGGc- -3'
miRNA:   3'- -GC-CGUUGGCGC-------------A---------------UGUCGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 17451 0.66 0.547986
Target:  5'- cCGGCuGCUGCGaagaagACcgAGCGCGCGGc-- -3'
miRNA:   3'- -GCCGuUGGCGCa-----UG--UCGCGUGCCuau -5'
28171 3' -56.5 NC_005887.1 + 17745 0.66 0.547986
Target:  5'- uCGGCAcgGCCGCGcggcugAUGGCGCcCGGu-- -3'
miRNA:   3'- -GCCGU--UGGCGCa-----UGUCGCGuGCCuau -5'
28171 3' -56.5 NC_005887.1 + 17807 0.68 0.443311
Target:  5'- gGGCGcccgGCCGaagGUGCGGcCGCGCGuGAUGc -3'
miRNA:   3'- gCCGU----UGGCg--CAUGUC-GCGUGC-CUAU- -5'
28171 3' -56.5 NC_005887.1 + 18360 0.7 0.317903
Target:  5'- gGGCGAcuuCCGCGUagACGGCGCGcCGGc-- -3'
miRNA:   3'- gCCGUU---GGCGCA--UGUCGCGU-GCCuau -5'
28171 3' -56.5 NC_005887.1 + 19625 0.66 0.547986
Target:  5'- uCGGCA-CCGUcgugauggcugGUAUAGCGCA-GGAUc -3'
miRNA:   3'- -GCCGUuGGCG-----------CAUGUCGCGUgCCUAu -5'
28171 3' -56.5 NC_005887.1 + 20537 0.66 0.547986
Target:  5'- uCGGCGcGCC-CG-GCAGCGCcGCGGAc- -3'
miRNA:   3'- -GCCGU-UGGcGCaUGUCGCG-UGCCUau -5'
28171 3' -56.5 NC_005887.1 + 21267 0.67 0.463397
Target:  5'- gGGC-ACCGCGgcgGCGGCGUAUGc--- -3'
miRNA:   3'- gCCGuUGGCGCa--UGUCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 24216 0.73 0.217581
Target:  5'- uCGGCGGCCcgcgcuucgccgguuGCGUACAGCGCGucCGGu-- -3'
miRNA:   3'- -GCCGUUGG---------------CGCAUGUCGCGU--GCCuau -5'
28171 3' -56.5 NC_005887.1 + 24330 0.68 0.423724
Target:  5'- cCGGCG--CGCGUA-AGCGCGCGGcgGu -3'
miRNA:   3'- -GCCGUugGCGCAUgUCGCGUGCCuaU- -5'
28171 3' -56.5 NC_005887.1 + 24926 0.67 0.50493
Target:  5'- uCGGCAccguugucgAUCGCGacGCGuGCGCGCGGGc- -3'
miRNA:   3'- -GCCGU---------UGGCGCa-UGU-CGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 25155 0.69 0.367331
Target:  5'- gCGGCGcaacauuGCCGCGUGCGGC-CGCGu--- -3'
miRNA:   3'- -GCCGU-------UGGCGCAUGUCGcGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 25495 0.66 0.547986
Target:  5'- gCGGCGGCU-CGgacgAUGGCGCGgCGGGUGg -3'
miRNA:   3'- -GCCGUUGGcGCa---UGUCGCGU-GCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 25988 0.68 0.414127
Target:  5'- uCGGCGACgCG-GUACAGCuuCACGGGc- -3'
miRNA:   3'- -GCCGUUG-GCgCAUGUCGc-GUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 26213 0.7 0.342392
Target:  5'- gCGGUGGCCgGCcUGCagcuGGCGCACGGGUc -3'
miRNA:   3'- -GCCGUUGG-CGcAUG----UCGCGUGCCUAu -5'
28171 3' -56.5 NC_005887.1 + 26228 0.66 0.546894
Target:  5'- gGGUggUUGCGcGCGGCGCAgcgccacCGGAa- -3'
miRNA:   3'- gCCGuuGGCGCaUGUCGCGU-------GCCUau -5'
28171 3' -56.5 NC_005887.1 + 26325 0.68 0.453294
Target:  5'- aGGUucaGGCCGUGgcCGGCGCuggcCGGGUGc -3'
miRNA:   3'- gCCG---UUGGCGCauGUCGCGu---GCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 26396 0.68 0.433453
Target:  5'- gCGaCAGCgGCGUGCGGCGCGUGGc-- -3'
miRNA:   3'- -GCcGUUGgCGCAUGUCGCGUGCCuau -5'
28171 3' -56.5 NC_005887.1 + 26421 0.73 0.197946
Target:  5'- uGGCGGCCGCGcgggaacgcgcgcUGCAGCcGCGCGaGAUc -3'
miRNA:   3'- gCCGUUGGCGC-------------AUGUCG-CGUGC-CUAu -5'
28171 3' -56.5 NC_005887.1 + 27032 0.67 0.50493
Target:  5'- uCGGCGAgCGCGcgACcGCGCACGc--- -3'
miRNA:   3'- -GCCGUUgGCGCa-UGuCGCGUGCcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.