Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28171 | 3' | -56.5 | NC_005887.1 | + | 37448 | 0.69 | 0.359459 |
Target: 5'- gCGGCGcuuGCCuGCGcgguuUGCAGUGCGcCGGAUGc -3' miRNA: 3'- -GCCGU---UGG-CGC-----AUGUCGCGU-GCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 41730 | 0.69 | 0.359459 |
Target: 5'- gCGGCGAuCCGauccCGGCGCGCGGGc- -3' miRNA: 3'- -GCCGUU-GGCgcauGUCGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 7590 | 0.69 | 0.359459 |
Target: 5'- aCGGCA-UCGCGUaaGCGGCGC-CGGu-- -3' miRNA: 3'- -GCCGUuGGCGCA--UGUCGCGuGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 25155 | 0.69 | 0.367331 |
Target: 5'- gCGGCGcaacauuGCCGCGUGCGGC-CGCGu--- -3' miRNA: 3'- -GCCGU-------UGGCGCAUGUCGcGUGCcuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 32635 | 0.69 | 0.368213 |
Target: 5'- gCGGCAcgaugugaucgACCGUGUGCAGCuCACcGGUGu -3' miRNA: 3'- -GCCGU-----------UGGCGCAUGUCGcGUGcCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 14345 | 0.69 | 0.368213 |
Target: 5'- gCGGCGAUCGUGaaGCAGCGUGcCGGGc- -3' miRNA: 3'- -GCCGUUGGCGCa-UGUCGCGU-GCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 34140 | 0.69 | 0.377112 |
Target: 5'- --aCAGCCcgcGCGUGuCGGUGCGCGGGUAg -3' miRNA: 3'- gccGUUGG---CGCAU-GUCGCGUGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 33471 | 0.69 | 0.386155 |
Target: 5'- -cGCGAgCGCGUACGGCGUcgcgaucucgACGGGc- -3' miRNA: 3'- gcCGUUgGCGCAUGUCGCG----------UGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 14541 | 0.69 | 0.39534 |
Target: 5'- uCGGCGG-CGCGUcgaucgGCAugucGCGCGCGGAa- -3' miRNA: 3'- -GCCGUUgGCGCA------UGU----CGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 41265 | 0.69 | 0.39534 |
Target: 5'- uCGGCAAUgGCGccgucgACcuGCGCACGGGc- -3' miRNA: 3'- -GCCGUUGgCGCa-----UGu-CGCGUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 25988 | 0.68 | 0.414127 |
Target: 5'- uCGGCGACgCG-GUACAGCuuCACGGGc- -3' miRNA: 3'- -GCCGUUG-GCgCAUGUCGc-GUGCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 24330 | 0.68 | 0.423724 |
Target: 5'- cCGGCG--CGCGUA-AGCGCGCGGcgGu -3' miRNA: 3'- -GCCGUugGCGCAUgUCGCGUGCCuaU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 26396 | 0.68 | 0.433453 |
Target: 5'- gCGaCAGCgGCGUGCGGCGCGUGGc-- -3' miRNA: 3'- -GCcGUUGgCGCAUGUCGCGUGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 32744 | 0.68 | 0.433453 |
Target: 5'- gCGGCGcUCGCGUGCgcgccGGCGCGCGc--- -3' miRNA: 3'- -GCCGUuGGCGCAUG-----UCGCGUGCcuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 17807 | 0.68 | 0.443311 |
Target: 5'- gGGCGcccgGCCGaagGUGCGGcCGCGCGuGAUGc -3' miRNA: 3'- gCCGU----UGGCg--CAUGUC-GCGUGC-CUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 26325 | 0.68 | 0.453294 |
Target: 5'- aGGUucaGGCCGUGgcCGGCGCuggcCGGGUGc -3' miRNA: 3'- gCCG---UUGGCGCauGUCGCGu---GCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 29879 | 0.68 | 0.453294 |
Target: 5'- gCGGCAgGCCgaGCGUACGGCGUuucuucACGGc-- -3' miRNA: 3'- -GCCGU-UGG--CGCAUGUCGCG------UGCCuau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 34299 | 0.68 | 0.453294 |
Target: 5'- gCGGCuGACUGCGgGCGGCa-ACGGGUAg -3' miRNA: 3'- -GCCG-UUGGCGCaUGUCGcgUGCCUAU- -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 10566 | 0.68 | 0.453294 |
Target: 5'- cCGGC-GCCGCaaacgggACAGCGCAaGGAa- -3' miRNA: 3'- -GCCGuUGGCGca-----UGUCGCGUgCCUau -5' |
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28171 | 3' | -56.5 | NC_005887.1 | + | 27387 | 0.68 | 0.457321 |
Target: 5'- gCGGCGuaggcgucgaguugcGgCGCGUcguacgGCAGCGCGCGGcGUGc -3' miRNA: 3'- -GCCGU---------------UgGCGCA------UGUCGCGUGCC-UAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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