miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28171 3' -56.5 NC_005887.1 + 29595 0.67 0.473618
Target:  5'- aCGGCGGuguucUCGCGuUGCAGCGCgGCGcGAUc -3'
miRNA:   3'- -GCCGUU-----GGCGC-AUGUCGCG-UGC-CUAu -5'
28171 3' -56.5 NC_005887.1 + 1480 0.67 0.473618
Target:  5'- aCGcCGACgGCGUGCGGCGCucgcGCGGc-- -3'
miRNA:   3'- -GCcGUUGgCGCAUGUCGCG----UGCCuau -5'
28171 3' -56.5 NC_005887.1 + 29955 0.67 0.463397
Target:  5'- aCGGUGucgagcGCCGCGaACAccGcCGCGCGGAUGc -3'
miRNA:   3'- -GCCGU------UGGCGCaUGU--C-GCGUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 21267 0.67 0.463397
Target:  5'- gGGC-ACCGCGgcgGCGGCGUAUGc--- -3'
miRNA:   3'- gCCGuUGGCGCa--UGUCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 27387 0.68 0.457321
Target:  5'- gCGGCGuaggcgucgaguugcGgCGCGUcguacgGCAGCGCGCGGcGUGc -3'
miRNA:   3'- -GCCGU---------------UgGCGCA------UGUCGCGUGCC-UAU- -5'
28171 3' -56.5 NC_005887.1 + 26325 0.68 0.453294
Target:  5'- aGGUucaGGCCGUGgcCGGCGCuggcCGGGUGc -3'
miRNA:   3'- gCCG---UUGGCGCauGUCGCGu---GCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 10566 0.68 0.453294
Target:  5'- cCGGC-GCCGCaaacgggACAGCGCAaGGAa- -3'
miRNA:   3'- -GCCGuUGGCGca-----UGUCGCGUgCCUau -5'
28171 3' -56.5 NC_005887.1 + 29879 0.68 0.453294
Target:  5'- gCGGCAgGCCgaGCGUACGGCGUuucuucACGGc-- -3'
miRNA:   3'- -GCCGU-UGG--CGCAUGUCGCG------UGCCuau -5'
28171 3' -56.5 NC_005887.1 + 34299 0.68 0.453294
Target:  5'- gCGGCuGACUGCGgGCGGCa-ACGGGUAg -3'
miRNA:   3'- -GCCG-UUGGCGCaUGUCGcgUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 17807 0.68 0.443311
Target:  5'- gGGCGcccgGCCGaagGUGCGGcCGCGCGuGAUGc -3'
miRNA:   3'- gCCGU----UGGCg--CAUGUC-GCGUGC-CUAU- -5'
28171 3' -56.5 NC_005887.1 + 32744 0.68 0.433453
Target:  5'- gCGGCGcUCGCGUGCgcgccGGCGCGCGc--- -3'
miRNA:   3'- -GCCGUuGGCGCAUG-----UCGCGUGCcuau -5'
28171 3' -56.5 NC_005887.1 + 26396 0.68 0.433453
Target:  5'- gCGaCAGCgGCGUGCGGCGCGUGGc-- -3'
miRNA:   3'- -GCcGUUGgCGCAUGUCGCGUGCCuau -5'
28171 3' -56.5 NC_005887.1 + 24330 0.68 0.423724
Target:  5'- cCGGCG--CGCGUA-AGCGCGCGGcgGu -3'
miRNA:   3'- -GCCGUugGCGCAUgUCGCGUGCCuaU- -5'
28171 3' -56.5 NC_005887.1 + 25988 0.68 0.414127
Target:  5'- uCGGCGACgCG-GUACAGCuuCACGGGc- -3'
miRNA:   3'- -GCCGUUG-GCgCAUGUCGc-GUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 14541 0.69 0.39534
Target:  5'- uCGGCGG-CGCGUcgaucgGCAugucGCGCGCGGAa- -3'
miRNA:   3'- -GCCGUUgGCGCA------UGU----CGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 41265 0.69 0.39534
Target:  5'- uCGGCAAUgGCGccgucgACcuGCGCACGGGc- -3'
miRNA:   3'- -GCCGUUGgCGCa-----UGu-CGCGUGCCUau -5'
28171 3' -56.5 NC_005887.1 + 33471 0.69 0.386155
Target:  5'- -cGCGAgCGCGUACGGCGUcgcgaucucgACGGGc- -3'
miRNA:   3'- gcCGUUgGCGCAUGUCGCG----------UGCCUau -5'
28171 3' -56.5 NC_005887.1 + 34140 0.69 0.377112
Target:  5'- --aCAGCCcgcGCGUGuCGGUGCGCGGGUAg -3'
miRNA:   3'- gccGUUGG---CGCAU-GUCGCGUGCCUAU- -5'
28171 3' -56.5 NC_005887.1 + 32635 0.69 0.368213
Target:  5'- gCGGCAcgaugugaucgACCGUGUGCAGCuCACcGGUGu -3'
miRNA:   3'- -GCCGU-----------UGGCGCAUGUCGcGUGcCUAU- -5'
28171 3' -56.5 NC_005887.1 + 14345 0.69 0.368213
Target:  5'- gCGGCGAUCGUGaaGCAGCGUGcCGGGc- -3'
miRNA:   3'- -GCCGUUGGCGCa-UGUCGCGU-GCCUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.