miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28172 3' -52.9 NC_005887.1 + 12390 0.67 0.69772
Target:  5'- cGCGGCGGUGUUcgCG-GCGcUCGa--- -3'
miRNA:   3'- -CGCCGCCACGAa-GCaCGUaAGCaucg -5'
28172 3' -52.9 NC_005887.1 + 11873 0.68 0.663962
Target:  5'- uCGGCGGUcUUUCGU-CGUUCGgcAGCg -3'
miRNA:   3'- cGCCGCCAcGAAGCAcGUAAGCa-UCG- -5'
28172 3' -52.9 NC_005887.1 + 8713 0.72 0.444558
Target:  5'- cGCGGCGGUaagcGCUUCGUcGCGgccacgaaggaUucgacgaaacagUCGUGGCu -3'
miRNA:   3'- -CGCCGCCA----CGAAGCA-CGU-----------A------------AGCAUCG- -5'
28172 3' -52.9 NC_005887.1 + 4753 0.68 0.663962
Target:  5'- cCGGCGGUGCUUU-UGCGa-CG-AGCg -3'
miRNA:   3'- cGCCGCCACGAAGcACGUaaGCaUCG- -5'
28172 3' -52.9 NC_005887.1 + 2169 0.69 0.584596
Target:  5'- gGCGGCGauuccCUUCGUGCcgUCGcgcAGCu -3'
miRNA:   3'- -CGCCGCcac--GAAGCACGuaAGCa--UCG- -5'
28172 3' -52.9 NC_005887.1 + 840 0.66 0.797986
Target:  5'- cGCGGCcgcgaagaaagccaaGGUGCc-CGUGgAcgCGUGGCc -3'
miRNA:   3'- -CGCCG---------------CCACGaaGCACgUaaGCAUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.