Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28172 | 3' | -52.9 | NC_005887.1 | + | 12390 | 0.67 | 0.69772 |
Target: 5'- cGCGGCGGUGUUcgCG-GCGcUCGa--- -3' miRNA: 3'- -CGCCGCCACGAa-GCaCGUaAGCaucg -5' |
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28172 | 3' | -52.9 | NC_005887.1 | + | 11873 | 0.68 | 0.663962 |
Target: 5'- uCGGCGGUcUUUCGU-CGUUCGgcAGCg -3' miRNA: 3'- cGCCGCCAcGAAGCAcGUAAGCa-UCG- -5' |
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28172 | 3' | -52.9 | NC_005887.1 | + | 8713 | 0.72 | 0.444558 |
Target: 5'- cGCGGCGGUaagcGCUUCGUcGCGgccacgaaggaUucgacgaaacagUCGUGGCu -3' miRNA: 3'- -CGCCGCCA----CGAAGCA-CGU-----------A------------AGCAUCG- -5' |
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28172 | 3' | -52.9 | NC_005887.1 | + | 4753 | 0.68 | 0.663962 |
Target: 5'- cCGGCGGUGCUUU-UGCGa-CG-AGCg -3' miRNA: 3'- cGCCGCCACGAAGcACGUaaGCaUCG- -5' |
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28172 | 3' | -52.9 | NC_005887.1 | + | 2169 | 0.69 | 0.584596 |
Target: 5'- gGCGGCGauuccCUUCGUGCcgUCGcgcAGCu -3' miRNA: 3'- -CGCCGCcac--GAAGCACGuaAGCa--UCG- -5' |
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28172 | 3' | -52.9 | NC_005887.1 | + | 840 | 0.66 | 0.797986 |
Target: 5'- cGCGGCcgcgaagaaagccaaGGUGCc-CGUGgAcgCGUGGCc -3' miRNA: 3'- -CGCCG---------------CCACGaaGCACgUaaGCAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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