miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28174 3' -55.4 NC_005887.1 + 34580 1.09 0.000756
Target:  5'- uCGCGUUCACGUAGCAGCCGGCGUAGAu -3'
miRNA:   3'- -GCGCAAGUGCAUCGUCGGCCGCAUCU- -5'
28174 3' -55.4 NC_005887.1 + 14634 0.74 0.240774
Target:  5'- gCGCGcUCACG--GCAGCCGGCGcGGu -3'
miRNA:   3'- -GCGCaAGUGCauCGUCGGCCGCaUCu -5'
28174 3' -55.4 NC_005887.1 + 12149 0.73 0.253772
Target:  5'- aCGCG---GCGUGGCuGGCCGGCG-AGAa -3'
miRNA:   3'- -GCGCaagUGCAUCG-UCGGCCGCaUCU- -5'
28174 3' -55.4 NC_005887.1 + 18780 0.7 0.378814
Target:  5'- uCGCGUUCGCacuGcCGGCCGGCGa--- -3'
miRNA:   3'- -GCGCAAGUGcauC-GUCGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 27456 0.7 0.406426
Target:  5'- aGCGgcacCGUAGCAGCUGGCGc--- -3'
miRNA:   3'- gCGCaaguGCAUCGUCGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 26404 0.7 0.425522
Target:  5'- gCGgGUUCugGUcgagcuGGCGGCCGcGCG-GGAa -3'
miRNA:   3'- -GCgCAAGugCA------UCGUCGGC-CGCaUCU- -5'
28174 3' -55.4 NC_005887.1 + 5343 0.69 0.435269
Target:  5'- aCGUGUUCGCGUAcggccugcgcguGCucGCCGGCGa--- -3'
miRNA:   3'- -GCGCAAGUGCAU------------CGu-CGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 13779 0.69 0.445143
Target:  5'- cCGCGUcCGCGcAGCGGgCGGCGa--- -3'
miRNA:   3'- -GCGCAaGUGCaUCGUCgGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 35823 0.69 0.455141
Target:  5'- uGUGUUCcuCGUGcGCcgcGUCGGCGUAGAu -3'
miRNA:   3'- gCGCAAGu-GCAU-CGu--CGGCCGCAUCU- -5'
28174 3' -55.4 NC_005887.1 + 1912 0.69 0.475493
Target:  5'- aCGCGUUCuuucGGCAGCCgGGCGgcGu -3'
miRNA:   3'- -GCGCAAGugcaUCGUCGG-CCGCauCu -5'
28174 3' -55.4 NC_005887.1 + 9820 0.69 0.475493
Target:  5'- cCGCGaaCGCGUcGCAGCCGGUc---- -3'
miRNA:   3'- -GCGCaaGUGCAuCGUCGGCCGcaucu -5'
28174 3' -55.4 NC_005887.1 + 23971 0.68 0.485838
Target:  5'- uCGgGUUCGCG-AGC-GCCGGCGc--- -3'
miRNA:   3'- -GCgCAAGUGCaUCGuCGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 32746 0.68 0.528219
Target:  5'- gGCGcUCGCGU-GCGcGCCGGCGc--- -3'
miRNA:   3'- gCGCaAGUGCAuCGU-CGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 41354 0.68 0.539034
Target:  5'- gCGCGcgCACG--GCGGCCGGCa---- -3'
miRNA:   3'- -GCGCaaGUGCauCGUCGGCCGcaucu -5'
28174 3' -55.4 NC_005887.1 + 41600 0.68 0.539034
Target:  5'- gGCGgccCAgGUgcGGCGGCCGGCGcGGc -3'
miRNA:   3'- gCGCaa-GUgCA--UCGUCGGCCGCaUCu -5'
28174 3' -55.4 NC_005887.1 + 28026 0.68 0.539034
Target:  5'- cCGCGUUCACcu-GCuuGUCGGCGUcGGc -3'
miRNA:   3'- -GCGCAAGUGcauCGu-CGGCCGCAuCU- -5'
28174 3' -55.4 NC_005887.1 + 29600 0.68 0.539034
Target:  5'- gGUGUucUCGCGUuGCAGCgCGGCGc--- -3'
miRNA:   3'- gCGCA--AGUGCAuCGUCG-GCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 41818 0.67 0.56088
Target:  5'- gCGCGg-CGCGcGGCGGCCGacGCGUucAGAu -3'
miRNA:   3'- -GCGCaaGUGCaUCGUCGGC--CGCA--UCU- -5'
28174 3' -55.4 NC_005887.1 + 18369 0.67 0.56088
Target:  5'- cCGCGUagACGgcGC-GCCGGCGc--- -3'
miRNA:   3'- -GCGCAagUGCauCGuCGGCCGCaucu -5'
28174 3' -55.4 NC_005887.1 + 17397 0.67 0.571895
Target:  5'- aCGCGcuggucgaUCACGUcGGCGGCaUGGCGaAGAa -3'
miRNA:   3'- -GCGCa-------AGUGCA-UCGUCG-GCCGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.