Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28174 | 3' | -55.4 | NC_005887.1 | + | 34580 | 1.09 | 0.000756 |
Target: 5'- uCGCGUUCACGUAGCAGCCGGCGUAGAu -3' miRNA: 3'- -GCGCAAGUGCAUCGUCGGCCGCAUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 11375 | 0.66 | 0.609676 |
Target: 5'- gCGCGggCgucagcgcagccggaGCGcUGGCGGCCGGCGc--- -3' miRNA: 3'- -GCGCaaG---------------UGC-AUCGUCGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 31001 | 0.66 | 0.616378 |
Target: 5'- uGCGUcucUCGCGUGGCG--CGGCGcAGGc -3' miRNA: 3'- gCGCA---AGUGCAUCGUcgGCCGCaUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 1495 | 0.66 | 0.616378 |
Target: 5'- gGCGcucgCGCGgcGCGGCCGuGCGg--- -3' miRNA: 3'- gCGCaa--GUGCauCGUCGGC-CGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 15482 | 0.66 | 0.638742 |
Target: 5'- aCGCGUUCG---AGCuGGCCGcGCGUcAGAu -3' miRNA: 3'- -GCGCAAGUgcaUCG-UCGGC-CGCA-UCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 36976 | 0.66 | 0.64992 |
Target: 5'- gGCGUcgCGCGggucgAGCucGCCGGCGa--- -3' miRNA: 3'- gCGCAa-GUGCa----UCGu-CGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 28405 | 0.66 | 0.661081 |
Target: 5'- aCGCG--CACGUcGCAGCCGaGCGc--- -3' miRNA: 3'- -GCGCaaGUGCAuCGUCGGC-CGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 40768 | 0.66 | 0.661081 |
Target: 5'- gCGCGccgCGCGccGCcgAGCCGGCGgucgAGGu -3' miRNA: 3'- -GCGCaa-GUGCauCG--UCGGCCGCa---UCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 34633 | 0.66 | 0.661081 |
Target: 5'- uCGcCGUUCGCGUcgacgaGGCGcGCCGGCu---- -3' miRNA: 3'- -GC-GCAAGUGCA------UCGU-CGGCCGcaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 37168 | 0.66 | 0.605212 |
Target: 5'- cCGC-UUCACGUucuccugcgucGGCucggcguccuucAGCuCGGCGUAGAu -3' miRNA: 3'- -GCGcAAGUGCA-----------UCG------------UCG-GCCGCAUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 21058 | 0.66 | 0.605212 |
Target: 5'- --gGUUCGuCGUcGGC-GCCGGUGUGGGg -3' miRNA: 3'- gcgCAAGU-GCA-UCGuCGGCCGCAUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 17397 | 0.67 | 0.571895 |
Target: 5'- aCGCGcuggucgaUCACGUcGGCGGCaUGGCGaAGAa -3' miRNA: 3'- -GCGCa-------AGUGCA-UCGUCG-GCCGCaUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 14634 | 0.74 | 0.240774 |
Target: 5'- gCGCGcUCACG--GCAGCCGGCGcGGu -3' miRNA: 3'- -GCGCaAGUGCauCGUCGGCCGCaUCu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 26404 | 0.7 | 0.425522 |
Target: 5'- gCGgGUUCugGUcgagcuGGCGGCCGcGCG-GGAa -3' miRNA: 3'- -GCgCAAGugCA------UCGUCGGC-CGCaUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 35823 | 0.69 | 0.455141 |
Target: 5'- uGUGUUCcuCGUGcGCcgcGUCGGCGUAGAu -3' miRNA: 3'- gCGCAAGu-GCAU-CGu--CGGCCGCAUCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 1912 | 0.69 | 0.475493 |
Target: 5'- aCGCGUUCuuucGGCAGCCgGGCGgcGu -3' miRNA: 3'- -GCGCAAGugcaUCGUCGG-CCGCauCu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 9820 | 0.69 | 0.475493 |
Target: 5'- cCGCGaaCGCGUcGCAGCCGGUc---- -3' miRNA: 3'- -GCGCaaGUGCAuCGUCGGCCGcaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 32746 | 0.68 | 0.528219 |
Target: 5'- gGCGcUCGCGU-GCGcGCCGGCGc--- -3' miRNA: 3'- gCGCaAGUGCAuCGU-CGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 41600 | 0.68 | 0.539034 |
Target: 5'- gGCGgccCAgGUgcGGCGGCCGGCGcGGc -3' miRNA: 3'- gCGCaa-GUgCA--UCGUCGGCCGCaUCu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 18369 | 0.67 | 0.56088 |
Target: 5'- cCGCGUagACGgcGC-GCCGGCGc--- -3' miRNA: 3'- -GCGCAagUGCauCGuCGGCCGCaucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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