Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28174 | 3' | -55.4 | NC_005887.1 | + | 28026 | 0.68 | 0.539034 |
Target: 5'- cCGCGUUCACcu-GCuuGUCGGCGUcGGc -3' miRNA: 3'- -GCGCAAGUGcauCGu-CGGCCGCAuCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 23971 | 0.68 | 0.485838 |
Target: 5'- uCGgGUUCGCG-AGC-GCCGGCGc--- -3' miRNA: 3'- -GCgCAAGUGCaUCGuCGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 13779 | 0.69 | 0.445143 |
Target: 5'- cCGCGUcCGCGcAGCGGgCGGCGa--- -3' miRNA: 3'- -GCGCAaGUGCaUCGUCgGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 5343 | 0.69 | 0.435269 |
Target: 5'- aCGUGUUCGCGUAcggccugcgcguGCucGCCGGCGa--- -3' miRNA: 3'- -GCGCAAGUGCAU------------CGu-CGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 27456 | 0.7 | 0.406426 |
Target: 5'- aGCGgcacCGUAGCAGCUGGCGc--- -3' miRNA: 3'- gCGCaaguGCAUCGUCGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 18780 | 0.7 | 0.378814 |
Target: 5'- uCGCGUUCGCacuGcCGGCCGGCGa--- -3' miRNA: 3'- -GCGCAAGUGcauC-GUCGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 29600 | 0.68 | 0.539034 |
Target: 5'- gGUGUucUCGCGUuGCAGCgCGGCGc--- -3' miRNA: 3'- gCGCA--AGUGCAuCGUCG-GCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 41354 | 0.68 | 0.539034 |
Target: 5'- gCGCGcgCACG--GCGGCCGGCa---- -3' miRNA: 3'- -GCGCaaGUGCauCGUCGGCCGcaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 41818 | 0.67 | 0.56088 |
Target: 5'- gCGCGg-CGCGcGGCGGCCGacGCGUucAGAu -3' miRNA: 3'- -GCGCaaGUGCaUCGUCGGC--CGCA--UCU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 29020 | 0.67 | 0.582962 |
Target: 5'- gCGCGgcgagaucCGCGauGCGGCCGGCGUugccGAa -3' miRNA: 3'- -GCGCaa------GUGCauCGUCGGCCGCAu---CU- -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 40355 | 0.66 | 0.605212 |
Target: 5'- cCGCGcu--CGUAGUAGCCGGCc---- -3' miRNA: 3'- -GCGCaaguGCAUCGUCGGCCGcaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 19122 | 0.66 | 0.616378 |
Target: 5'- cCGcCGcUCGCGU-GCcGUCGGCGUGGc -3' miRNA: 3'- -GC-GCaAGUGCAuCGuCGGCCGCAUCu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 20821 | 0.66 | 0.627558 |
Target: 5'- aGCGU---CGUgaauuucccGGCAGCCGGCGUc-- -3' miRNA: 3'- gCGCAaguGCA---------UCGUCGGCCGCAucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 19475 | 0.66 | 0.64992 |
Target: 5'- aGCG--CGCGaggaucugaUAGCGGCCGGCGg--- -3' miRNA: 3'- gCGCaaGUGC---------AUCGUCGGCCGCaucu -5' |
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28174 | 3' | -55.4 | NC_005887.1 | + | 12149 | 0.73 | 0.253772 |
Target: 5'- aCGCG---GCGUGGCuGGCCGGCG-AGAa -3' miRNA: 3'- -GCGCaagUGCAUCG-UCGGCCGCaUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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