miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28178 5' -56.3 NC_005887.1 + 40463 1.11 0.000564
Target:  5'- cCCGAAUGCCGGCGUCGACGAGCUCGAu -3'
miRNA:   3'- -GGCUUACGGCCGCAGCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 16960 0.76 0.175592
Target:  5'- aCCGcgcGgCGGCaauGUCGGCGAGCUCGAc -3'
miRNA:   3'- -GGCuuaCgGCCG---CAGCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 26845 0.75 0.189821
Target:  5'- uCCGGAaacugGCCGGCGUCcaucuGACGcgcggccAGCUCGAa -3'
miRNA:   3'- -GGCUUa----CGGCCGCAG-----CUGC-------UCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 9139 0.75 0.200749
Target:  5'- aCCGAGUGCCagugcGGCGcguucaucUgGACGGGCUCGu -3'
miRNA:   3'- -GGCUUACGG-----CCGC--------AgCUGCUCGAGCu -5'
28178 5' -56.3 NC_005887.1 + 4901 0.74 0.241184
Target:  5'- gCCGAggGCCGGCG-CGAgGuGUUCGu -3'
miRNA:   3'- -GGCUuaCGGCCGCaGCUgCuCGAGCu -5'
28178 5' -56.3 NC_005887.1 + 5619 0.74 0.243689
Target:  5'- -aGGAUGCgGGCGaCGcggugaaggcgauacGCGAGCUCGAa -3'
miRNA:   3'- ggCUUACGgCCGCaGC---------------UGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 26970 0.73 0.247486
Target:  5'- gCGAucaGCgCGGCGUCGACcuGCUCGGg -3'
miRNA:   3'- gGCUua-CG-GCCGCAGCUGcuCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 35057 0.73 0.267211
Target:  5'- gCGAGgucgcUGCCGuCGUCGGCGGGCgCGAc -3'
miRNA:   3'- gGCUU-----ACGGCcGCAGCUGCUCGaGCU- -5'
28178 5' -56.3 NC_005887.1 + 20856 0.72 0.288187
Target:  5'- gCCGAuUGCCGGCGgCGAUGcgagauAGgUCGAg -3'
miRNA:   3'- -GGCUuACGGCCGCaGCUGC------UCgAGCU- -5'
28178 5' -56.3 NC_005887.1 + 6033 0.72 0.318138
Target:  5'- aUCGAGUGCgCGGCGUCGACcgccGCgcaGAu -3'
miRNA:   3'- -GGCUUACG-GCCGCAGCUGcu--CGag-CU- -5'
28178 5' -56.3 NC_005887.1 + 11059 0.72 0.318138
Target:  5'- gCCG-AUGCCGGuCGagcUCGACGAGgcgaUCGAc -3'
miRNA:   3'- -GGCuUACGGCC-GC---AGCUGCUCg---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 30158 0.71 0.333969
Target:  5'- gCCG-AUGCCGGCGUCGA--AGUcgCGGa -3'
miRNA:   3'- -GGCuUACGGCCGCAGCUgcUCGa-GCU- -5'
28178 5' -56.3 NC_005887.1 + 26040 0.71 0.358782
Target:  5'- cUCGAAcagGCCGGCGUCcugcguguucaaGGCGuGCUCa- -3'
miRNA:   3'- -GGCUUa--CGGCCGCAG------------CUGCuCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 5021 0.71 0.358782
Target:  5'- aCCGAugccaGUGCCGGCGcugcugCGACGAccgaaUCGAa -3'
miRNA:   3'- -GGCU-----UACGGCCGCa-----GCUGCUcg---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 40782 0.71 0.370795
Target:  5'- gCCGA--GCCGGCGgucgagguucguggCGGCGAcgcgccGCUCGAc -3'
miRNA:   3'- -GGCUuaCGGCCGCa-------------GCUGCU------CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 25248 0.7 0.393822
Target:  5'- gCGGAUucCCGGCGUCGucgagguauuGCGAGCggUCGAg -3'
miRNA:   3'- gGCUUAc-GGCCGCAGC----------UGCUCG--AGCU- -5'
28178 5' -56.3 NC_005887.1 + 18918 0.7 0.402922
Target:  5'- gCgGGAUgGCgGGCGgcugCGACGAGCugaUCGAc -3'
miRNA:   3'- -GgCUUA-CGgCCGCa---GCUGCUCG---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 31270 0.7 0.402922
Target:  5'- cUCGucgGCC-GCGUCGAucgccucguCGAGCUCGAc -3'
miRNA:   3'- -GGCuuaCGGcCGCAGCU---------GCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 24906 0.7 0.402922
Target:  5'- gUCGGAUucggGCCGuaGCGcUCGACGAGCgCGAu -3'
miRNA:   3'- -GGCUUA----CGGC--CGC-AGCUGCUCGaGCU- -5'
28178 5' -56.3 NC_005887.1 + 2028 0.7 0.412154
Target:  5'- uUCGGcgGCgaacgucuuCGGCauGUCGuCGAGCUCGAa -3'
miRNA:   3'- -GGCUuaCG---------GCCG--CAGCuGCUCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.