miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28178 5' -56.3 NC_005887.1 + 946 0.67 0.574903
Target:  5'- cCCGAGUGCuuCGGCGaaGGCGuGCagcaCGAg -3'
miRNA:   3'- -GGCUUACG--GCCGCagCUGCuCGa---GCU- -5'
28178 5' -56.3 NC_005887.1 + 1576 0.68 0.532056
Target:  5'- cUCGAccGCCGGC-UCGGCG-GCgcgCGGc -3'
miRNA:   3'- -GGCUuaCGGCCGcAGCUGCuCGa--GCU- -5'
28178 5' -56.3 NC_005887.1 + 2028 0.7 0.412154
Target:  5'- uUCGGcgGCgaacgucuuCGGCauGUCGuCGAGCUCGAa -3'
miRNA:   3'- -GGCUuaCG---------GCCG--CAGCuGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 2414 0.69 0.460201
Target:  5'- aCGcGAUGCgCGuCGUCGACGcgcccGGCUCGAu -3'
miRNA:   3'- gGC-UUACG-GCcGCAGCUGC-----UCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 3158 0.68 0.490414
Target:  5'- aCCuGAUGCCGcGCcUCGACaAGUUCGGg -3'
miRNA:   3'- -GGcUUACGGC-CGcAGCUGcUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 4901 0.74 0.241184
Target:  5'- gCCGAggGCCGGCG-CGAgGuGUUCGu -3'
miRNA:   3'- -GGCUuaCGGCCGCaGCUgCuCGAGCu -5'
28178 5' -56.3 NC_005887.1 + 5021 0.71 0.358782
Target:  5'- aCCGAugccaGUGCCGGCGcugcugCGACGAccgaaUCGAa -3'
miRNA:   3'- -GGCU-----UACGGCCGCa-----GCUGCUcg---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 5351 0.68 0.490414
Target:  5'- gCGuAcgGCCuGcGCGUgcucgcCGGCGAGCUCGAc -3'
miRNA:   3'- gGC-UuaCGG-C-CGCA------GCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 5619 0.74 0.243689
Target:  5'- -aGGAUGCgGGCGaCGcggugaaggcgauacGCGAGCUCGAa -3'
miRNA:   3'- ggCUUACGgCCGCaGC---------------UGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 6033 0.72 0.318138
Target:  5'- aUCGAGUGCgCGGCGUCGACcgccGCgcaGAu -3'
miRNA:   3'- -GGCUUACG-GCCGCAGCUGcu--CGag-CU- -5'
28178 5' -56.3 NC_005887.1 + 7411 0.67 0.553356
Target:  5'- gCCGAGUucgaaGCCGGCGaCGGCaAGUUCc- -3'
miRNA:   3'- -GGCUUA-----CGGCCGCaGCUGcUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 7924 0.66 0.629437
Target:  5'- aCCGcu--CCGGaaacCGagGACGAGCUCGAc -3'
miRNA:   3'- -GGCuuacGGCC----GCagCUGCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 8462 0.67 0.541607
Target:  5'- aUCGAGcGcCCGGCGcaaccgcUCGGCGAcgacacgugGCUCGAg -3'
miRNA:   3'- -GGCUUaC-GGCCGC-------AGCUGCU---------CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 9139 0.75 0.200749
Target:  5'- aCCGAGUGCCagugcGGCGcguucaucUgGACGGGCUCGu -3'
miRNA:   3'- -GGCUUACGG-----CCGC--------AgCUGCUCGAGCu -5'
28178 5' -56.3 NC_005887.1 + 10307 0.67 0.552285
Target:  5'- uCCGucUGCgGGCGUCGGugccccgcacaucCGAGaUCGAa -3'
miRNA:   3'- -GGCuuACGgCCGCAGCU-------------GCUCgAGCU- -5'
28178 5' -56.3 NC_005887.1 + 10469 0.67 0.553356
Target:  5'- aCGGuuacgGCCGGCG-CGAUcacGCUCGAc -3'
miRNA:   3'- gGCUua---CGGCCGCaGCUGcu-CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 11059 0.72 0.318138
Target:  5'- gCCG-AUGCCGGuCGagcUCGACGAGgcgaUCGAc -3'
miRNA:   3'- -GGCuUACGGCC-GC---AGCUGCUCg---AGCU- -5'
28178 5' -56.3 NC_005887.1 + 13389 0.67 0.542672
Target:  5'- gCUGAagGCCGGCG-CGGCGGaCgUCGGc -3'
miRNA:   3'- -GGCUuaCGGCCGCaGCUGCUcG-AGCU- -5'
28178 5' -56.3 NC_005887.1 + 13913 0.68 0.479225
Target:  5'- uUCGug-GCacguacgCGGUGUCGACGGGgUCGAa -3'
miRNA:   3'- -GGCuuaCG-------GCCGCAGCUGCUCgAGCU- -5'
28178 5' -56.3 NC_005887.1 + 15145 0.66 0.629437
Target:  5'- aCCGAccccAUGCaGGCGcUCGACG-GCauggCGAa -3'
miRNA:   3'- -GGCU----UACGgCCGC-AGCUGCuCGa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.