miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 41528 0.66 0.482063
Target:  5'- cGGCCGCG-AUCGcGCGAG-CAuGGCu- -3'
miRNA:   3'- aCCGGCGUgUAGC-CGUUCuGU-CCGug -5'
28179 5' -57.7 NC_005887.1 + 41512 0.66 0.482063
Target:  5'- cGGCaagucgacgGUGC-UCGGCAAGAUccgcgAGGCGCu -3'
miRNA:   3'- aCCGg--------CGUGuAGCCGUUCUG-----UCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 41467 0.69 0.293283
Target:  5'- aGGCCGCcugacuCGUcCGGCGGcGCGGGcCACg -3'
miRNA:   3'- aCCGGCGu-----GUA-GCCGUUcUGUCC-GUG- -5'
28179 5' -57.7 NC_005887.1 + 40963 0.66 0.49249
Target:  5'- gGGCCcaugaugaacgaGCGCGaCGcGCGGGACAGGauguaGCg -3'
miRNA:   3'- aCCGG------------CGUGUaGC-CGUUCUGUCCg----UG- -5'
28179 5' -57.7 NC_005887.1 + 40875 0.67 0.3936
Target:  5'- aGcGCCGCACgccGUCGGCGu--CGGGCu- -3'
miRNA:   3'- aC-CGGCGUG---UAGCCGUucuGUCCGug -5'
28179 5' -57.7 NC_005887.1 + 40670 0.66 0.451447
Target:  5'- cGGCCGCAcCAUCcuGCAccuGGCGcGCGCg -3'
miRNA:   3'- aCCGGCGU-GUAGc-CGUu--CUGUcCGUG- -5'
28179 5' -57.7 NC_005887.1 + 40622 1.09 0.000325
Target:  5'- gUGGCCGCACAUCGGCAAGACAGGCACu -3'
miRNA:   3'- -ACCGGCGUGUAGCCGUUCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 40089 0.68 0.366535
Target:  5'- gGGCUGCACAUCuacgugcugugGGaCGAGccGCAGGaCGCc -3'
miRNA:   3'- aCCGGCGUGUAG-----------CC-GUUC--UGUCC-GUG- -5'
28179 5' -57.7 NC_005887.1 + 39322 0.69 0.293283
Target:  5'- uUGGCCGaGCAUggcuuugcccgCGGCGcuGGccGCAGGCGCg -3'
miRNA:   3'- -ACCGGCgUGUA-----------GCCGU--UC--UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 38116 0.71 0.244591
Target:  5'- cGGCCGaGCGUCGGCGcGAgCAG-CACg -3'
miRNA:   3'- aCCGGCgUGUAGCCGUuCU-GUCcGUG- -5'
28179 5' -57.7 NC_005887.1 + 37839 0.67 0.3936
Target:  5'- -cGCCGCcguaGUCGGCGAG-CAGacGCGCg -3'
miRNA:   3'- acCGGCGug--UAGCCGUUCuGUC--CGUG- -5'
28179 5' -57.7 NC_005887.1 + 37525 0.67 0.3936
Target:  5'- cGGUCGaCugGUUGGCGcGGCAGaacuGCGCg -3'
miRNA:   3'- aCCGGC-GugUAGCCGUuCUGUC----CGUG- -5'
28179 5' -57.7 NC_005887.1 + 36886 0.68 0.33167
Target:  5'- cGGCCuGCGuCGUgguggaugCGGCAGGagugccaGCGGGCGCg -3'
miRNA:   3'- aCCGG-CGU-GUA--------GCCGUUC-------UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 36513 0.68 0.349217
Target:  5'- cGGUCGaccgcaGCAUCgGGCGGcGGCAGGUAUu -3'
miRNA:   3'- aCCGGCg-----UGUAG-CCGUU-CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 35552 0.67 0.402905
Target:  5'- aUGGuCUGCucgACAUgugCGGCGAGcgcCGGGCACa -3'
miRNA:   3'- -ACC-GGCG---UGUA---GCCGUUCu--GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 35060 0.66 0.482063
Target:  5'- aGGUCGCugcCGUCGuc--GGCGGGCGCg -3'
miRNA:   3'- aCCGGCGu--GUAGCcguuCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 33649 0.71 0.243947
Target:  5'- cGcGCUGCGC-UCGGCGAGGguuucauugaucuCGGGCAUa -3'
miRNA:   3'- aC-CGGCGUGuAGCCGUUCU-------------GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 33466 0.68 0.332491
Target:  5'- aGGuCCGCgagcGCGUaCGGCGucgcgaucucGACGGGCGCg -3'
miRNA:   3'- aCC-GGCG----UGUA-GCCGUu---------CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 32781 0.67 0.384435
Target:  5'- cGGCUcguGCGCAggaUCGGCGcGcgccgcuucACGGGCACg -3'
miRNA:   3'- aCCGG---CGUGU---AGCCGUuC---------UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 32738 0.67 0.431639
Target:  5'- cGGUCGCGCAUCaGGCAAagccGAUu-GCGCc -3'
miRNA:   3'- aCCGGCGUGUAG-CCGUU----CUGucCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.