miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 362 0.67 0.402905
Target:  5'- gGGCCGCAgGcCGuGCugcuGAUAGGCGa -3'
miRNA:   3'- aCCGGCGUgUaGC-CGuu--CUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 876 0.68 0.332491
Target:  5'- gUGGcCCGCGCcgcCGGaCGAGuCAGGCGg -3'
miRNA:   3'- -ACC-GGCGUGua-GCC-GUUCuGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 2189 0.68 0.349217
Target:  5'- -cGUCGCGCAgcucacacgCGGCGAGcGCGGcGCGCa -3'
miRNA:   3'- acCGGCGUGUa--------GCCGUUC-UGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 2190 0.66 0.475857
Target:  5'- cGGCCGCGgugAUCgGGCAGcgcaaaccgaugggcGGCuGGCGCa -3'
miRNA:   3'- aCCGGCGUg--UAG-CCGUU---------------CUGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 2325 0.69 0.32435
Target:  5'- aGGUCGCugGCAUCuauGGCGAuccGGCGGGCGa -3'
miRNA:   3'- aCCGGCG--UGUAG---CCGUU---CUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 2576 0.67 0.384435
Target:  5'- aUGGCCGUGag-CGGCGAG-C-GGUACg -3'
miRNA:   3'- -ACCGGCGUguaGCCGUUCuGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 3302 0.73 0.166894
Target:  5'- cGGCgaCGCagcucugGCAUCGGCugAAGACGGGCAa -3'
miRNA:   3'- aCCG--GCG-------UGUAGCCG--UUCUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 3789 0.66 0.451447
Target:  5'- gGGCCGCgaccGCAUCGuGCAGaACAGcggcuuucGCACc -3'
miRNA:   3'- aCCGGCG----UGUAGC-CGUUcUGUC--------CGUG- -5'
28179 5' -57.7 NC_005887.1 + 4072 0.69 0.300826
Target:  5'- -aGCCGCugcuCAcgGGCAAG-CAGGCGCa -3'
miRNA:   3'- acCGGCGu---GUagCCGUUCuGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 4253 0.66 0.44049
Target:  5'- cGGCCGCACGcagucugaacugcUCGGCccgauGAUcGcGCGCg -3'
miRNA:   3'- aCCGGCGUGU-------------AGCCGuu---CUGuC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 4399 0.66 0.482063
Target:  5'- aGGCaauGCGCGcCGGCgAAGGCGcGGCGa -3'
miRNA:   3'- aCCGg--CGUGUaGCCG-UUCUGU-CCGUg -5'
28179 5' -57.7 NC_005887.1 + 4586 0.69 0.300826
Target:  5'- -uGCCGCGCAacgacgaCGGCAAGuuGGGCGg -3'
miRNA:   3'- acCGGCGUGUa------GCCGUUCugUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 4676 0.69 0.293283
Target:  5'- -cGCUGCGCAgaCGGCGAgggucuGAUGGGCGCg -3'
miRNA:   3'- acCGGCGUGUa-GCCGUU------CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 5245 0.67 0.431639
Target:  5'- cGGCCGCGCgAUCGcCGAGGCuGuGCuCg -3'
miRNA:   3'- aCCGGCGUG-UAGCcGUUCUGuC-CGuG- -5'
28179 5' -57.7 NC_005887.1 + 5514 0.77 0.089478
Target:  5'- cGGCCGCAgCAcCGGCcgcaGCAGGCACg -3'
miRNA:   3'- aCCGGCGU-GUaGCCGuuc-UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 5853 0.67 0.402905
Target:  5'- cGGagcucaCCGCGCugaaaGGCGAGugGGGCGa -3'
miRNA:   3'- aCC------GGCGUGuag--CCGUUCugUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 5931 0.68 0.357803
Target:  5'- cGGCCGCg---CGG-AAGGCGGuGCGCa -3'
miRNA:   3'- aCCGGCGuguaGCCgUUCUGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 6424 0.68 0.329217
Target:  5'- cUGGCCGaucugaacggcaaCACcgCGGCAuuccgucuguccgaAGAcCGGGCGCa -3'
miRNA:   3'- -ACCGGC-------------GUGuaGCCGU--------------UCU-GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 6440 0.67 0.384435
Target:  5'- cGGCCGCGCcgagAUCGaaguGCGcgaccugaAGuACGGGCGCg -3'
miRNA:   3'- aCCGGCGUG----UAGC----CGU--------UC-UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 6800 0.67 0.402905
Target:  5'- -cGCCGCACAugUCGaGC-AGACcaucGGCGCu -3'
miRNA:   3'- acCGGCGUGU--AGC-CGuUCUGu---CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.