miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 6860 0.67 0.421927
Target:  5'- cGGaccuCGCgACGUCGGCcaacgcGCAGGCGCu -3'
miRNA:   3'- aCCg---GCG-UGUAGCCGuuc---UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 6955 0.66 0.49249
Target:  5'- aGGCCGUgcgcgggcGCAUCGaGCAugAGcuguGCAGGCccGCg -3'
miRNA:   3'- aCCGGCG--------UGUAGC-CGU--UC----UGUCCG--UG- -5'
28179 5' -57.7 NC_005887.1 + 9123 0.68 0.34078
Target:  5'- cUGGUCGCaagcGCAUCGGUAuu-CAGGC-Cg -3'
miRNA:   3'- -ACCGGCG----UGUAGCCGUucuGUCCGuG- -5'
28179 5' -57.7 NC_005887.1 + 9777 0.75 0.11599
Target:  5'- -aGCCuGCugAUCGGCAuGACGGGCGa -3'
miRNA:   3'- acCGG-CGugUAGCCGUuCUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 10030 0.66 0.461536
Target:  5'- cGGCCGCGC--UGGCAcGaACAgcGGCAUc -3'
miRNA:   3'- aCCGGCGUGuaGCCGUuC-UGU--CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 10114 0.66 0.471743
Target:  5'- cGGCCaGCugAUCGGCu--GCAcGUACg -3'
miRNA:   3'- aCCGG-CGugUAGCCGuucUGUcCGUG- -5'
28179 5' -57.7 NC_005887.1 + 10514 0.66 0.451447
Target:  5'- -aGCCGUauucggaacgggGCggCGGCAAGAaGGGCAUg -3'
miRNA:   3'- acCGGCG------------UGuaGCCGUUCUgUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 11799 0.66 0.451447
Target:  5'- cGGCgGC--GUCGGUucguacgcuAAGGCAGGCGg -3'
miRNA:   3'- aCCGgCGugUAGCCG---------UUCUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 12110 0.7 0.251113
Target:  5'- cUGGCCGCGCAgaagCGcCAGGACGaGCAg -3'
miRNA:   3'- -ACCGGCGUGUa---GCcGUUCUGUcCGUg -5'
28179 5' -57.7 NC_005887.1 + 12141 0.7 0.285888
Target:  5'- aGGCCGCGacgCGGCGuGGCuGGCcgGCg -3'
miRNA:   3'- aCCGGCGUguaGCCGUuCUGuCCG--UG- -5'
28179 5' -57.7 NC_005887.1 + 12705 0.68 0.332491
Target:  5'- cGcGCCGCGCGUgagugacgaCGGCGAGAUcagcuauauGGGCGu -3'
miRNA:   3'- aC-CGGCGUGUA---------GCCGUUCUG---------UCCGUg -5'
28179 5' -57.7 NC_005887.1 + 13165 0.66 0.470717
Target:  5'- aGGCCGCGCAgauccUCGcagcgcaGCAAGACAucCGCu -3'
miRNA:   3'- aCCGGCGUGU-----AGC-------CGUUCUGUccGUG- -5'
28179 5' -57.7 NC_005887.1 + 13595 0.66 0.451447
Target:  5'- aGGCCGCGuacuuCAUCgcugcuGGCAGcGCGGcGCGCg -3'
miRNA:   3'- aCCGGCGU-----GUAG------CCGUUcUGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 13894 0.73 0.172059
Target:  5'- cGGCUcguGCGCGUCGGCAuu-CGuGGCACg -3'
miRNA:   3'- aCCGG---CGUGUAGCCGUucuGU-CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 13939 0.7 0.251113
Target:  5'- gGGUCGaaguuCGUcaCGGaCAAGACGGGCGCg -3'
miRNA:   3'- aCCGGCgu---GUA--GCC-GUUCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 14203 0.66 0.471743
Target:  5'- cGGgCGCgGCcUCGGaCAGGGC-GGCGCc -3'
miRNA:   3'- aCCgGCG-UGuAGCC-GUUCUGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 14693 0.69 0.308518
Target:  5'- -aGCCGCGCGcgCGGCAGcuCAGcGCGCa -3'
miRNA:   3'- acCGGCGUGUa-GCCGUUcuGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 14714 0.71 0.231969
Target:  5'- gGGCCGgGCG-CGGCGAucgcGCAGGCGa -3'
miRNA:   3'- aCCGGCgUGUaGCCGUUc---UGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 14823 0.67 0.412348
Target:  5'- cGGCCGCGac---GCugauGGCGGGCACg -3'
miRNA:   3'- aCCGGCGUguagcCGuu--CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 14917 0.76 0.100465
Target:  5'- gGGCCgGCAUGggccUCGGCAAGACGGucaGCACg -3'
miRNA:   3'- aCCGG-CGUGU----AGCCGUUCUGUC---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.