Results 21 - 40 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 40670 | 0.66 | 0.451447 |
Target: 5'- cGGCCGCAcCAUCcuGCAccuGGCGcGCGCg -3' miRNA: 3'- aCCGGCGU-GUAGc-CGUu--CUGUcCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 15615 | 0.66 | 0.461536 |
Target: 5'- gGGCguCGCGCAgcaggCGGCcGGGCucgccgaucaGGGCGCc -3' miRNA: 3'- aCCG--GCGUGUa----GCCGuUCUG----------UCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 16201 | 0.66 | 0.461536 |
Target: 5'- aGGCCGCGCugcgacCGGaCAc-GCAGGuCACg -3' miRNA: 3'- aCCGGCGUGua----GCC-GUucUGUCC-GUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 10030 | 0.66 | 0.461536 |
Target: 5'- cGGCCGCGC--UGGCAcGaACAgcGGCAUc -3' miRNA: 3'- aCCGGCGUGuaGCCGUuC-UGU--CCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 26716 | 0.67 | 0.384435 |
Target: 5'- cGGCCGCggGCAgcUCGaCAuAGAcCGGGCGCa -3' miRNA: 3'- aCCGGCG--UGU--AGCcGU-UCU-GUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 31275 | 0.67 | 0.3936 |
Target: 5'- cGGCCGCGucgaucgccuCGUCGaGCucGACcGGCAUc -3' miRNA: 3'- aCCGGCGU----------GUAGC-CGuuCUGuCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 5853 | 0.67 | 0.402905 |
Target: 5'- cGGagcucaCCGCGCugaaaGGCGAGugGGGCGa -3' miRNA: 3'- aCC------GGCGUGuag--CCGUUCugUCCGUg -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 26424 | 0.67 | 0.402905 |
Target: 5'- cGGCCGCGCGggaaCGcGCGcuGCAGccGCGCg -3' miRNA: 3'- aCCGGCGUGUa---GC-CGUucUGUC--CGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 35552 | 0.67 | 0.402905 |
Target: 5'- aUGGuCUGCucgACAUgugCGGCGAGcgcCGGGCACa -3' miRNA: 3'- -ACC-GGCG---UGUA---GCCGUUCu--GUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 17499 | 0.67 | 0.412348 |
Target: 5'- cGGCCGUGCAUgaUGGCAcGGAaauGcGCACg -3' miRNA: 3'- aCCGGCGUGUA--GCCGU-UCUgu-C-CGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 14823 | 0.67 | 0.412348 |
Target: 5'- cGGCCGCGac---GCugauGGCGGGCACg -3' miRNA: 3'- aCCGGCGUguagcCGuu--CUGUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 32781 | 0.67 | 0.384435 |
Target: 5'- cGGCUcguGCGCAggaUCGGCGcGcgccgcuucACGGGCACg -3' miRNA: 3'- aCCGG---CGUGU---AGCCGUuC---------UGUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 31885 | 0.67 | 0.384435 |
Target: 5'- gUGGUgGUggGCGUCGGCcagccGGuCAGGCAUg -3' miRNA: 3'- -ACCGgCG--UGUAGCCGu----UCuGUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 16492 | 0.67 | 0.384435 |
Target: 5'- cGGCgGgCugGUCGGCGAugucGCAGGC-Cg -3' miRNA: 3'- aCCGgC-GugUAGCCGUUc---UGUCCGuG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 2576 | 0.67 | 0.384435 |
Target: 5'- aUGGCCGUGag-CGGCGAG-C-GGUACg -3' miRNA: 3'- -ACCGGCGUguaGCCGUUCuGuCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 5245 | 0.67 | 0.431639 |
Target: 5'- cGGCCGCGCgAUCGcCGAGGCuGuGCuCg -3' miRNA: 3'- aCCGGCGUG-UAGCcGUUCUGuC-CGuG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 32738 | 0.67 | 0.431639 |
Target: 5'- cGGUCGCGCAUCaGGCAAagccGAUu-GCGCc -3' miRNA: 3'- aCCGGCGUGUAG-CCGUU----CUGucCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 15493 | 0.67 | 0.431639 |
Target: 5'- cUGGCCGCGCGUCaGauGGACGccGGC-Ca -3' miRNA: 3'- -ACCGGCGUGUAGcCguUCUGU--CCGuG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 6860 | 0.67 | 0.421927 |
Target: 5'- cGGaccuCGCgACGUCGGCcaacgcGCAGGCGCu -3' miRNA: 3'- aCCg---GCG-UGUAGCCGuuc---UGUCCGUG- -5' |
|||||||
28179 | 5' | -57.7 | NC_005887.1 | + | 28501 | 0.67 | 0.416164 |
Target: 5'- ---aCGCGCGcCGGCGGGAagaugacgaugcgguCAGGCACg -3' miRNA: 3'- accgGCGUGUaGCCGUUCU---------------GUCCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home