miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 27263 0.7 0.285156
Target:  5'- cGGCC-CGCGucgccaaugaUCGGCAcgacuuccaugccGGACAGGUGCu -3'
miRNA:   3'- aCCGGcGUGU----------AGCCGU-------------UCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 12141 0.7 0.285888
Target:  5'- aGGCCGCGacgCGGCGuGGCuGGCcgGCg -3'
miRNA:   3'- aCCGGCGUguaGCCGUuCUGuCCG--UG- -5'
28179 5' -57.7 NC_005887.1 + 39322 0.69 0.293283
Target:  5'- uUGGCCGaGCAUggcuuugcccgCGGCGcuGGccGCAGGCGCg -3'
miRNA:   3'- -ACCGGCgUGUA-----------GCCGU--UC--UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 41467 0.69 0.293283
Target:  5'- aGGCCGCcugacuCGUcCGGCGGcGCGGGcCACg -3'
miRNA:   3'- aCCGGCGu-----GUA-GCCGUUcUGUCC-GUG- -5'
28179 5' -57.7 NC_005887.1 + 4676 0.69 0.293283
Target:  5'- -cGCUGCGCAgaCGGCGAgggucuGAUGGGCGCg -3'
miRNA:   3'- acCGGCGUGUa-GCCGUU------CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 4586 0.69 0.300826
Target:  5'- -uGCCGCGCAacgacgaCGGCAAGuuGGGCGg -3'
miRNA:   3'- acCGGCGUGUa------GCCGUUCugUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 4072 0.69 0.300826
Target:  5'- -aGCCGCugcuCAcgGGCAAG-CAGGCGCa -3'
miRNA:   3'- acCGGCGu---GUagCCGUUCuGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 16869 0.69 0.308518
Target:  5'- -cGCgGCGCGgaCGGCucGACAGGCAa -3'
miRNA:   3'- acCGgCGUGUa-GCCGuuCUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 14693 0.69 0.308518
Target:  5'- -aGCCGCGCGcgCGGCAGcuCAGcGCGCa -3'
miRNA:   3'- acCGGCGUGUa-GCCGUUcuGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 27835 0.69 0.31636
Target:  5'- cGGCCGCGCcugcaagCGGaccaccaagcacCGcGGCGGGCACg -3'
miRNA:   3'- aCCGGCGUGua-----GCC------------GUuCUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 27755 0.69 0.31636
Target:  5'- gUGGCCgaugccgaGCGCGcCGGCGAGGUAGaGCGCc -3'
miRNA:   3'- -ACCGG--------CGUGUaGCCGUUCUGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 17395 0.69 0.32435
Target:  5'- cGGCCGCGC----GCAAGGCGGcccGCGCg -3'
miRNA:   3'- aCCGGCGUGuagcCGUUCUGUC---CGUG- -5'
28179 5' -57.7 NC_005887.1 + 2325 0.69 0.32435
Target:  5'- aGGUCGCugGCAUCuauGGCGAuccGGCGGGCGa -3'
miRNA:   3'- aCCGGCG--UGUAG---CCGUU---CUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 28209 0.69 0.32435
Target:  5'- aGcGCCGCGCGucUCGGCGGuuuugaGCAGcGCGCg -3'
miRNA:   3'- aC-CGGCGUGU--AGCCGUUc-----UGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 6424 0.68 0.329217
Target:  5'- cUGGCCGaucugaacggcaaCACcgCGGCAuuccgucuguccgaAGAcCGGGCGCa -3'
miRNA:   3'- -ACCGGC-------------GUGuaGCCGU--------------UCU-GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 36886 0.68 0.33167
Target:  5'- cGGCCuGCGuCGUgguggaugCGGCAGGagugccaGCGGGCGCg -3'
miRNA:   3'- aCCGG-CGU-GUA--------GCCGUUC-------UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 12705 0.68 0.332491
Target:  5'- cGcGCCGCGCGUgagugacgaCGGCGAGAUcagcuauauGGGCGu -3'
miRNA:   3'- aC-CGGCGUGUA---------GCCGUUCUG---------UCCGUg -5'
28179 5' -57.7 NC_005887.1 + 33466 0.68 0.332491
Target:  5'- aGGuCCGCgagcGCGUaCGGCGucgcgaucucGACGGGCGCg -3'
miRNA:   3'- aCC-GGCG----UGUA-GCCGUu---------CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 876 0.68 0.332491
Target:  5'- gUGGcCCGCGCcgcCGGaCGAGuCAGGCGg -3'
miRNA:   3'- -ACC-GGCGUGua-GCC-GUUCuGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 17193 0.68 0.332491
Target:  5'- cGGCCGCACG-CGGCAAuguuGCGccGCGCa -3'
miRNA:   3'- aCCGGCGUGUaGCCGUUc---UGUc-CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.