miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 3789 0.66 0.451447
Target:  5'- gGGCCGCgaccGCAUCGuGCAGaACAGcggcuuucGCACc -3'
miRNA:   3'- aCCGGCG----UGUAGC-CGUUcUGUC--------CGUG- -5'
28179 5' -57.7 NC_005887.1 + 13595 0.66 0.451447
Target:  5'- aGGCCGCGuacuuCAUCgcugcuGGCAGcGCGGcGCGCg -3'
miRNA:   3'- aCCGGCGU-----GUAG------CCGUUcUGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 18325 0.66 0.44148
Target:  5'- cGGCacuggggGCGCAUCGGCGAcaugcGACguucGGGCGa -3'
miRNA:   3'- aCCGg------CGUGUAGCCGUU-----CUG----UCCGUg -5'
28179 5' -57.7 NC_005887.1 + 4253 0.66 0.44049
Target:  5'- cGGCCGCACGcagucugaacugcUCGGCccgauGAUcGcGCGCg -3'
miRNA:   3'- aCCGGCGUGU-------------AGCCGuu---CUGuC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 5245 0.67 0.431639
Target:  5'- cGGCCGCGCgAUCGcCGAGGCuGuGCuCg -3'
miRNA:   3'- aCCGGCGUG-UAGCcGUUCUGuC-CGuG- -5'
28179 5' -57.7 NC_005887.1 + 15493 0.67 0.431639
Target:  5'- cUGGCCGCGCGUCaGauGGACGccGGC-Ca -3'
miRNA:   3'- -ACCGGCGUGUAGcCguUCUGU--CCGuG- -5'
28179 5' -57.7 NC_005887.1 + 32738 0.67 0.431639
Target:  5'- cGGUCGCGCAUCaGGCAAagccGAUu-GCGCc -3'
miRNA:   3'- aCCGGCGUGUAG-CCGUU----CUGucCGUG- -5'
28179 5' -57.7 NC_005887.1 + 6860 0.67 0.421927
Target:  5'- cGGaccuCGCgACGUCGGCcaacgcGCAGGCGCu -3'
miRNA:   3'- aCCg---GCG-UGUAGCCGuuc---UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 28501 0.67 0.416164
Target:  5'- ---aCGCGCGcCGGCGGGAagaugacgaugcgguCAGGCACg -3'
miRNA:   3'- accgGCGUGUaGCCGUUCU---------------GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 30258 0.67 0.412348
Target:  5'- cGGCCaGCACGUCGGUGAccuGACcGaGCGa -3'
miRNA:   3'- aCCGG-CGUGUAGCCGUU---CUGuC-CGUg -5'
28179 5' -57.7 NC_005887.1 + 14823 0.67 0.412348
Target:  5'- cGGCCGCGac---GCugauGGCGGGCACg -3'
miRNA:   3'- aCCGGCGUguagcCGuu--CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 17499 0.67 0.412348
Target:  5'- cGGCCGUGCAUgaUGGCAcGGAaauGcGCACg -3'
miRNA:   3'- aCCGGCGUGUA--GCCGU-UCUgu-C-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 5853 0.67 0.402905
Target:  5'- cGGagcucaCCGCGCugaaaGGCGAGugGGGCGa -3'
miRNA:   3'- aCC------GGCGUGuag--CCGUUCugUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 6800 0.67 0.402905
Target:  5'- -cGCCGCACAugUCGaGC-AGACcaucGGCGCu -3'
miRNA:   3'- acCGGCGUGU--AGC-CGuUCUGu---CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 362 0.67 0.402905
Target:  5'- gGGCCGCAgGcCGuGCugcuGAUAGGCGa -3'
miRNA:   3'- aCCGGCGUgUaGC-CGuu--CUGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 35552 0.67 0.402905
Target:  5'- aUGGuCUGCucgACAUgugCGGCGAGcgcCGGGCACa -3'
miRNA:   3'- -ACC-GGCG---UGUA---GCCGUUCu--GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 26424 0.67 0.402905
Target:  5'- cGGCCGCGCGggaaCGcGCGcuGCAGccGCGCg -3'
miRNA:   3'- aCCGGCGUGUa---GC-CGUucUGUC--CGUG- -5'
28179 5' -57.7 NC_005887.1 + 37525 0.67 0.3936
Target:  5'- cGGUCGaCugGUUGGCGcGGCAGaacuGCGCg -3'
miRNA:   3'- aCCGGC-GugUAGCCGUuCUGUC----CGUG- -5'
28179 5' -57.7 NC_005887.1 + 31275 0.67 0.3936
Target:  5'- cGGCCGCGucgaucgccuCGUCGaGCucGACcGGCAUc -3'
miRNA:   3'- aCCGGCGU----------GUAGC-CGuuCUGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 37839 0.67 0.3936
Target:  5'- -cGCCGCcguaGUCGGCGAG-CAGacGCGCg -3'
miRNA:   3'- acCGGCGug--UAGCCGUUCuGUC--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.