miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28179 5' -57.7 NC_005887.1 + 37839 0.67 0.3936
Target:  5'- -cGCCGCcguaGUCGGCGAG-CAGacGCGCg -3'
miRNA:   3'- acCGGCGug--UAGCCGUUCuGUC--CGUG- -5'
28179 5' -57.7 NC_005887.1 + 6440 0.67 0.384435
Target:  5'- cGGCCGCGCcgagAUCGaaguGCGcgaccugaAGuACGGGCGCg -3'
miRNA:   3'- aCCGGCGUG----UAGC----CGU--------UC-UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 16492 0.67 0.384435
Target:  5'- cGGCgGgCugGUCGGCGAugucGCAGGC-Cg -3'
miRNA:   3'- aCCGgC-GugUAGCCGUUc---UGUCCGuG- -5'
28179 5' -57.7 NC_005887.1 + 2576 0.67 0.384435
Target:  5'- aUGGCCGUGag-CGGCGAG-C-GGUACg -3'
miRNA:   3'- -ACCGGCGUguaGCCGUUCuGuCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 31885 0.67 0.384435
Target:  5'- gUGGUgGUggGCGUCGGCcagccGGuCAGGCAUg -3'
miRNA:   3'- -ACCGgCG--UGUAGCCGu----UCuGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 32781 0.67 0.384435
Target:  5'- cGGCUcguGCGCAggaUCGGCGcGcgccgcuucACGGGCACg -3'
miRNA:   3'- aCCGG---CGUGU---AGCCGUuC---------UGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 26716 0.67 0.384435
Target:  5'- cGGCCGCggGCAgcUCGaCAuAGAcCGGGCGCa -3'
miRNA:   3'- aCCGGCG--UGU--AGCcGU-UCU-GUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 40089 0.68 0.366535
Target:  5'- gGGCUGCACAUCuacgugcugugGGaCGAGccGCAGGaCGCc -3'
miRNA:   3'- aCCGGCGUGUAG-----------CC-GUUC--UGUCC-GUG- -5'
28179 5' -57.7 NC_005887.1 + 24959 0.68 0.366535
Target:  5'- gGGCCGCcuuGCGcgCGGCcgcgaGGGACAGGUc- -3'
miRNA:   3'- aCCGGCG---UGUa-GCCG-----UUCUGUCCGug -5'
28179 5' -57.7 NC_005887.1 + 5931 0.68 0.357803
Target:  5'- cGGCCGCg---CGG-AAGGCGGuGCGCa -3'
miRNA:   3'- aCCGGCGuguaGCCgUUCUGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 15654 0.68 0.349217
Target:  5'- cGGCCGCGCGaCGGCuguaucgcGACAuggaacGGCAg -3'
miRNA:   3'- aCCGGCGUGUaGCCGuu------CUGU------CCGUg -5'
28179 5' -57.7 NC_005887.1 + 2189 0.68 0.349217
Target:  5'- -cGUCGCGCAgcucacacgCGGCGAGcGCGGcGCGCa -3'
miRNA:   3'- acCGGCGUGUa--------GCCGUUC-UGUC-CGUG- -5'
28179 5' -57.7 NC_005887.1 + 36513 0.68 0.349217
Target:  5'- cGGUCGaccgcaGCAUCgGGCGGcGGCAGGUAUu -3'
miRNA:   3'- aCCGGCg-----UGUAG-CCGUU-CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 9123 0.68 0.34078
Target:  5'- cUGGUCGCaagcGCAUCGGUAuu-CAGGC-Cg -3'
miRNA:   3'- -ACCGGCG----UGUAGCCGUucuGUCCGuG- -5'
28179 5' -57.7 NC_005887.1 + 30683 0.68 0.34078
Target:  5'- gGGCagaucgaccuCGUAC-UCGGCGAG-CAGGUGCg -3'
miRNA:   3'- aCCG----------GCGUGuAGCCGUUCuGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 23426 0.68 0.34078
Target:  5'- cGGCCGCuGCGagauUCGGUGAGcgcuGCGGGCu- -3'
miRNA:   3'- aCCGGCG-UGU----AGCCGUUC----UGUCCGug -5'
28179 5' -57.7 NC_005887.1 + 27370 0.68 0.34078
Target:  5'- cGGCCuGCGCGgccugcgCGGCGuAGGCGucgaguugcGGCGCg -3'
miRNA:   3'- aCCGG-CGUGUa------GCCGU-UCUGU---------CCGUG- -5'
28179 5' -57.7 NC_005887.1 + 33466 0.68 0.332491
Target:  5'- aGGuCCGCgagcGCGUaCGGCGucgcgaucucGACGGGCGCg -3'
miRNA:   3'- aCC-GGCG----UGUA-GCCGUu---------CUGUCCGUG- -5'
28179 5' -57.7 NC_005887.1 + 876 0.68 0.332491
Target:  5'- gUGGcCCGCGCcgcCGGaCGAGuCAGGCGg -3'
miRNA:   3'- -ACC-GGCGUGua-GCC-GUUCuGUCCGUg -5'
28179 5' -57.7 NC_005887.1 + 17193 0.68 0.332491
Target:  5'- cGGCCGCACG-CGGCAAuguuGCGccGCGCa -3'
miRNA:   3'- aCCGGCGUGUaGCCGUUc---UGUc-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.