miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 3' -54.2 NC_001491.2 + 123791 1.14 0.002434
Target:  5'- aCCUCACCCACCAAUCCCUACCAUCCCc -3'
miRNA:   3'- -GGAGUGGGUGGUUAGGGAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 125311 0.75 0.541711
Target:  5'- gCCUuuaCACCCACCAccgccuagCCCUGCacaaCAUCCCu -3'
miRNA:   3'- -GGA---GUGGGUGGUua------GGGAUG----GUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 116081 0.74 0.612615
Target:  5'- cCCUCGuCCCAcucCCAGUCCCc-CCAgcacUCCCa -3'
miRNA:   3'- -GGAGU-GGGU---GGUUAGGGauGGU----AGGG- -5'
2818 3' -54.2 NC_001491.2 + 117910 0.74 0.633111
Target:  5'- cCCgUCGgCCGCCGGcucUCCCggGCCGUCCUc -3'
miRNA:   3'- -GG-AGUgGGUGGUU---AGGGa-UGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 112274 0.72 0.74784
Target:  5'- uCC-CGCCCACCAaucgcauucaaacggGUCCCcaUGCUAUaCCCc -3'
miRNA:   3'- -GGaGUGGGUGGU---------------UAGGG--AUGGUA-GGG- -5'
2818 3' -54.2 NC_001491.2 + 70265 0.71 0.772641
Target:  5'- -aUCAgCCGCCAAaucUCCCUGCUGUUUCc -3'
miRNA:   3'- ggAGUgGGUGGUU---AGGGAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 114917 0.71 0.781962
Target:  5'- aCCUCAgCCGCgCGGUCCUcACC-UCCa -3'
miRNA:   3'- -GGAGUgGGUG-GUUAGGGaUGGuAGGg -5'
2818 3' -54.2 NC_001491.2 + 122983 0.71 0.800191
Target:  5'- uCCgCGCCCGCC---CCCguccCCGUCCCc -3'
miRNA:   3'- -GGaGUGGGUGGuuaGGGau--GGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 140781 0.71 0.800191
Target:  5'- aCC-CACUCGCCAAcccaCCCaUACCA-CCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGG-AUGGUaGGG- -5'
2818 3' -54.2 NC_001491.2 + 116132 0.7 0.809081
Target:  5'- aCC-CugCCGCCccuguggCCC-ACCGUCCCc -3'
miRNA:   3'- -GGaGugGGUGGuua----GGGaUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 99148 0.7 0.81781
Target:  5'- cCCUCuGCCCA-CAGUCUCUgucgagcaagcuGCCGUUCCu -3'
miRNA:   3'- -GGAG-UGGGUgGUUAGGGA------------UGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 119840 0.7 0.826369
Target:  5'- --aCGCCCACCuuUCCCccuccCCcUCCCa -3'
miRNA:   3'- ggaGUGGGUGGuuAGGGau---GGuAGGG- -5'
2818 3' -54.2 NC_001491.2 + 124875 0.7 0.826369
Target:  5'- gCUCAgCUACUccgCCCUGCCGcugCCCa -3'
miRNA:   3'- gGAGUgGGUGGuuaGGGAUGGUa--GGG- -5'
2818 3' -54.2 NC_001491.2 + 1793 0.7 0.826369
Target:  5'- gCUCGCCguCCAcgCCCgcgGCCGcucugCCCc -3'
miRNA:   3'- gGAGUGGguGGUuaGGGa--UGGUa----GGG- -5'
2818 3' -54.2 NC_001491.2 + 149623 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 149803 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 149767 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 149407 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 149695 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 149587 0.7 0.842949
Target:  5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.