miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 3' -54.2 NC_001491.2 + 1793 0.7 0.826369
Target:  5'- gCUCGCCguCCAcgCCCgcgGCCGcucugCCCc -3'
miRNA:   3'- gGAGUGGguGGUuaGGGa--UGGUa----GGG- -5'
2818 3' -54.2 NC_001491.2 + 3112 0.68 0.894597
Target:  5'- aCCUCAucUCCACCAgggagGUCUaCUACCcUUCCg -3'
miRNA:   3'- -GGAGU--GGGUGGU-----UAGG-GAUGGuAGGG- -5'
2818 3' -54.2 NC_001491.2 + 5041 0.7 0.842949
Target:  5'- aCCaaaaACCUACCAAUgcgcaccagagaCCCUAUCAUCUCu -3'
miRNA:   3'- -GGag--UGGGUGGUUA------------GGGAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 24206 0.69 0.887873
Target:  5'- uCCUCACuUCAUCGAUCuuacacauugaCCUGCUAaCCCg -3'
miRNA:   3'- -GGAGUG-GGUGGUUAG-----------GGAUGGUaGGG- -5'
2818 3' -54.2 NC_001491.2 + 30036 0.66 0.963982
Target:  5'- aCCUCGCCagCAUCAAccUCCCcaaaugccucGCCAUaCCCc -3'
miRNA:   3'- -GGAGUGG--GUGGUU--AGGGa---------UGGUA-GGG- -5'
2818 3' -54.2 NC_001491.2 + 33733 0.66 0.963982
Target:  5'- aUCUgGUCCACCGccuccauuUCCCUGuCCGUCCa -3'
miRNA:   3'- -GGAgUGGGUGGUu-------AGGGAU-GGUAGGg -5'
2818 3' -54.2 NC_001491.2 + 49656 0.66 0.960537
Target:  5'- cCCcCAUCCGCCGG--CCUGCCcgCuCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUagGGAUGGuaG-GG- -5'
2818 3' -54.2 NC_001491.2 + 54868 0.66 0.963982
Target:  5'- gCCUCacacgaugACCCAuCCAGguuugCUgaGCUAUCCCg -3'
miRNA:   3'- -GGAG--------UGGGU-GGUUa----GGgaUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 56487 0.66 0.95687
Target:  5'- aCCgcuagaggCGCUguuuuUCGAUCCgCUGCCAUCCCc -3'
miRNA:   3'- -GGa-------GUGGgu---GGUUAGG-GAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 70265 0.71 0.772641
Target:  5'- -aUCAgCCGCCAAaucUCCCUGCUGUUUCc -3'
miRNA:   3'- ggAGUgGGUGGUU---AGGGAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 73990 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74054 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74118 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74182 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74246 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 78249 0.68 0.907351
Target:  5'- cCCUCACCCGCagggaggaugaGAUCUgcgUACCGUCUa -3'
miRNA:   3'- -GGAGUGGGUGg----------UUAGGg--AUGGUAGGg -5'
2818 3' -54.2 NC_001491.2 + 82044 0.68 0.894597
Target:  5'- --cCACCCACCAA-CCgUACCAauaaCCa -3'
miRNA:   3'- ggaGUGGGUGGUUaGGgAUGGUag--GG- -5'
2818 3' -54.2 NC_001491.2 + 82550 0.68 0.894597
Target:  5'- uCCUCGCCCACaGAUCCUagGCgCAgcuugUCCUc -3'
miRNA:   3'- -GGAGUGGGUGgUUAGGGa-UG-GU-----AGGG- -5'
2818 3' -54.2 NC_001491.2 + 99148 0.7 0.81781
Target:  5'- cCCUCuGCCCA-CAGUCUCUgucgagcaagcuGCCGUUCCu -3'
miRNA:   3'- -GGAG-UGGGUgGUUAGGGA------------UGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 107371 0.66 0.967211
Target:  5'- gCUCACCUACgGAcaCCCUucGCCccuGUCUCg -3'
miRNA:   3'- gGAGUGGGUGgUUa-GGGA--UGG---UAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.