miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 5' -54.9 NC_001491.2 + 123757 1.12 0.002391
Target:  5'- aCGGAGAGAGAGAAAACCGGCGAGGCCu -3'
miRNA:   3'- -GCCUCUCUCUCUUUUGGCCGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 119088 0.79 0.306603
Target:  5'- cCGGGGAGAGcguuAGAGAACgGgGCGAGuGCCa -3'
miRNA:   3'- -GCCUCUCUC----UCUUUUGgC-CGCUC-CGG- -5'
2818 5' -54.9 NC_001491.2 + 1282 0.76 0.443254
Target:  5'- gCGGGGGGAGAuGggGGCCaggcucucucucgGGCGcGGGCCc -3'
miRNA:   3'- -GCCUCUCUCU-CuuUUGG-------------CCGC-UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 139303 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139276 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139223 0.76 0.47183
Target:  5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139330 0.76 0.47183
Target:  5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139169 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139115 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139061 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139142 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139088 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139034 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 139196 0.76 0.47183
Target:  5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3'
miRNA:   3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 9732 0.75 0.526642
Target:  5'- cCGGAGAGAGGGAGAuuguGCUGGCcaccaGAuauuaccuauuccaGGCCa -3'
miRNA:   3'- -GCCUCUCUCUCUUU----UGGCCG-----CU--------------CCGG- -5'
2818 5' -54.9 NC_001491.2 + 44426 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 44551 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 44488 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 112995 0.75 0.539489
Target:  5'- gGGGGuGAGAcGcgGGCUGGgGGGGCCa -3'
miRNA:   3'- gCCUCuCUCU-CuuUUGGCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 88698 0.74 0.578605
Target:  5'- gCGGAGAGGcGAGAGAAcgguuagacCCGGCcuccgugGAGGCUu -3'
miRNA:   3'- -GCCUCUCU-CUCUUUU---------GGCCG-------CUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.