miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 5' -54.9 NC_001491.2 + 1282 0.76 0.443254
Target:  5'- gCGGGGGGAGAuGggGGCCaggcucucucucgGGCGcGGGCCc -3'
miRNA:   3'- -GCCUCUCUCU-CuuUUGG-------------CCGC-UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 1498 0.69 0.815188
Target:  5'- uGGAGAuGGAGAcaGAGgaGGCGcGGCCc -3'
miRNA:   3'- gCCUCUcUCUCU--UUUggCCGCuCCGG- -5'
2818 5' -54.9 NC_001491.2 + 5763 0.66 0.933334
Target:  5'- --aAGAGcGAGc-GGCCGGCGuuuGGCCa -3'
miRNA:   3'- gccUCUCuCUCuuUUGGCCGCu--CCGG- -5'
2818 5' -54.9 NC_001491.2 + 9732 0.75 0.526642
Target:  5'- cCGGAGAGAGGGAGAuuguGCUGGCcaccaGAuauuaccuauuccaGGCCa -3'
miRNA:   3'- -GCCUCUCUCUCUUU----UGGCCG-----CU--------------CCGG- -5'
2818 5' -54.9 NC_001491.2 + 16969 0.69 0.856312
Target:  5'- cCGGAGAGugcuauGAGggGcUCuGCGGGGCg -3'
miRNA:   3'- -GCCUCUCu-----CUCuuUuGGcCGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 18973 0.67 0.921719
Target:  5'- cCGGAGGGcGAGAcucgcgaGGGCCGuGUGugauaacGGGCCc -3'
miRNA:   3'- -GCCUCUCuCUCU-------UUUGGC-CGC-------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 19537 0.71 0.725566
Target:  5'- uGGGGAGGacagcaaaacuguccGGGAAAACCGGaGGGGUUg -3'
miRNA:   3'- gCCUCUCU---------------CUCUUUUGGCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 20150 0.67 0.898951
Target:  5'- uGGAGAauuggcGGGuGGAuuacAACCGGCGGGGg- -3'
miRNA:   3'- gCCUCU------CUCuCUU----UUGGCCGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 27593 0.67 0.902771
Target:  5'- uGGGGGGAGccauucucacuAAAgCGcGCGGGGCCg -3'
miRNA:   3'- gCCUCUCUCucu--------UUUgGC-CGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 44426 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 44488 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 44551 0.75 0.536515
Target:  5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3'
miRNA:   3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 47933 0.67 0.922823
Target:  5'- -cGAGGGGGAGGccuAGACC--UGAGGCCc -3'
miRNA:   3'- gcCUCUCUCUCU---UUUGGccGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 53231 0.73 0.620341
Target:  5'- aCGGAG-GcGGGAAGcCCGGCGucgggaGGGCCg -3'
miRNA:   3'- -GCCUCuCuCUCUUUuGGCCGC------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 66493 0.67 0.928198
Target:  5'- aCGGAGAGAGgcuggcauAGAGGggcacacguACCuGC-AGGCCa -3'
miRNA:   3'- -GCCUCUCUC--------UCUUU---------UGGcCGcUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 68156 0.67 0.905271
Target:  5'- cCGGAGgAGGGGGAAGAUacgaacggGGCGcgcuaaacGGCCa -3'
miRNA:   3'- -GCCUC-UCUCUCUUUUGg-------CCGCu-------CCGG- -5'
2818 5' -54.9 NC_001491.2 + 79525 0.71 0.721615
Target:  5'- gGGGGAGGGGGAuguuACCguugaugaGGCGuggcauGGCCa -3'
miRNA:   3'- gCCUCUCUCUCUuu--UGG--------CCGCu-----CCGG- -5'
2818 5' -54.9 NC_001491.2 + 88698 0.74 0.578605
Target:  5'- gCGGAGAGGcGAGAGAAcgguuagacCCGGCcuccgugGAGGCUu -3'
miRNA:   3'- -GCCUCUCU-CUCUUUU---------GGCCG-------CUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 90386 0.68 0.863957
Target:  5'- aGGAcGGAGGGAGGGCCGcuGCGAGaaaGUCu -3'
miRNA:   3'- gCCUcUCUCUCUUUUGGC--CGCUC---CGG- -5'
2818 5' -54.9 NC_001491.2 + 94148 0.66 0.942438
Target:  5'- uCGGAGAuaugcccGGGGGAAAgagugcACCG-CGGuGGCCg -3'
miRNA:   3'- -GCCUCU-------CUCUCUUU------UGGCcGCU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.