miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28180 5' -58.6 NC_005887.1 + 40745 1.12 0.000244
Target:  5'- cCGCGUCGAGGCGAUCGCCGUUGGCGCg -3'
miRNA:   3'- -GCGCAGCUCCGCUAGCGGCAACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 964 0.77 0.102665
Target:  5'- gGCGUgcagcaCGAGGUGAUCGCCGacacGCGCa -3'
miRNA:   3'- gCGCA------GCUCCGCUAGCGGCaac-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 6305 0.76 0.11795
Target:  5'- gCGCGUCGAGGCcuugCGCCucgccGGCGCc -3'
miRNA:   3'- -GCGCAGCUCCGcua-GCGGcaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 34951 0.74 0.150906
Target:  5'- uGCGacCGuGGCGAUCGUCGUcGGCGa -3'
miRNA:   3'- gCGCa-GCuCCGCUAGCGGCAaCCGCg -5'
28180 5' -58.6 NC_005887.1 + 7211 0.74 0.150906
Target:  5'- uCGCGUgCGcAGGCGcuGUCGgCGUcgGGCGCa -3'
miRNA:   3'- -GCGCA-GC-UCCGC--UAGCgGCAa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 10212 0.74 0.150906
Target:  5'- uCGCGUCGAuGCccgCGCCGgacGGCGCg -3'
miRNA:   3'- -GCGCAGCUcCGcuaGCGGCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 15616 0.74 0.159289
Target:  5'- gGCGUCGcgcagcAGGCGGccgggcUCGCCGaucagGGCGCc -3'
miRNA:   3'- gCGCAGC------UCCGCU------AGCGGCaa---CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 6922 0.73 0.199236
Target:  5'- aCGCGucgcUCGAccugaucgacucgugGGCGAagGCCGUgcgcgGGCGCa -3'
miRNA:   3'- -GCGC----AGCU---------------CCGCUagCGGCAa----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 32290 0.72 0.218885
Target:  5'- ----aCGGGGCGAUCGUCGggccagccGGCGCg -3'
miRNA:   3'- gcgcaGCUCCGCUAGCGGCaa------CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 7109 0.71 0.235896
Target:  5'- gCGCGUggucuaaCGAGGCGGggcggCGCUGc-GGCGCc -3'
miRNA:   3'- -GCGCA-------GCUCCGCUa----GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 16523 0.71 0.242633
Target:  5'- uCGCGUCGccGCcggCGCCGagugGGCGCg -3'
miRNA:   3'- -GCGCAGCucCGcuaGCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 20845 0.71 0.248896
Target:  5'- gGCGUCGuuGCgccGAUUGCCGgcGGCGa -3'
miRNA:   3'- gCGCAGCucCG---CUAGCGGCaaCCGCg -5'
28180 5' -58.6 NC_005887.1 + 28784 0.71 0.259194
Target:  5'- uCGCGUCGucggccugcucGGGCGGcagcgcaUCGCCGaUcgcauucgcgaucgUGGCGCg -3'
miRNA:   3'- -GCGCAGC-----------UCCGCU-------AGCGGC-A--------------ACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 11116 0.71 0.261822
Target:  5'- gCGCG-CGAagcuGGcCGAggCGCCGUggcGGCGCa -3'
miRNA:   3'- -GCGCaGCU----CC-GCUa-GCGGCAa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 18196 0.71 0.261822
Target:  5'- gGCGUuccugCGAGGCGAUCucgaaGCCc--GGCGCu -3'
miRNA:   3'- gCGCA-----GCUCCGCUAG-----CGGcaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 27693 0.7 0.280829
Target:  5'- aGCGUCGAaccGGCGAcgggcagcaccgCGCCGgcugccgUGaGCGCg -3'
miRNA:   3'- gCGCAGCU---CCGCUa-----------GCGGCa------AC-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 26465 0.7 0.282228
Target:  5'- gCGCGUCGAGcGCaccgaGCUGcUGGUGCg -3'
miRNA:   3'- -GCGCAGCUC-CGcuag-CGGCaACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33736 0.7 0.282929
Target:  5'- uCGCGgCGAGGaucaGcgCGCCGgccuucacgagcaucUGGCGCg -3'
miRNA:   3'- -GCGCaGCUCCg---CuaGCGGCa--------------ACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 5938 0.7 0.289304
Target:  5'- uGUGUcgggCGAGGUGAUCGauaagcUCGcUGGCGCg -3'
miRNA:   3'- gCGCA----GCUCCGCUAGC------GGCaACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 14206 0.7 0.296519
Target:  5'- gCGCGgccUCGgacaGGGCGGcgccgCGCUGUUcGGCGCg -3'
miRNA:   3'- -GCGC---AGC----UCCGCUa----GCGGCAA-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.