miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28180 5' -58.6 NC_005887.1 + 18186 0.68 0.365167
Target:  5'- uCGCGagGaAGGCGAguUCGCCGUgcugaacccggaucuGCGCa -3'
miRNA:   3'- -GCGCagC-UCCGCU--AGCGGCAac-------------CGCG- -5'
28180 5' -58.6 NC_005887.1 + 27608 0.7 0.296519
Target:  5'- uCGUGUCGaAGGCGcugauaccGUCGCgGUUGGUc- -3'
miRNA:   3'- -GCGCAGC-UCCGC--------UAGCGgCAACCGcg -5'
28180 5' -58.6 NC_005887.1 + 19828 0.7 0.297249
Target:  5'- gGCGUCGAcgacacacuGGCGAUCcaagagugcauuaauUCGUUGGCGUc -3'
miRNA:   3'- gCGCAGCU---------CCGCUAGc--------------GGCAACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 2631 0.69 0.311367
Target:  5'- aCGUGgcCGAGGCGAgucaguaccUGCUGgugGGCGCg -3'
miRNA:   3'- -GCGCa-GCUCCGCUa--------GCGGCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 23240 0.69 0.319
Target:  5'- aCGCGagCGGcGGCGGUCGgCGcgcaaaaGGCGCa -3'
miRNA:   3'- -GCGCa-GCU-CCGCUAGCgGCaa-----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 30438 0.69 0.329921
Target:  5'- cCGaCGUCGGGGCGGggcaugUUGCCGggcuggaacaggcGGUGCg -3'
miRNA:   3'- -GC-GCAGCUCCGCU------AGCGGCaa-----------CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 21272 0.69 0.342737
Target:  5'- cCGCGgCGGcGGCGuaugCGCUGcUGGCGUc -3'
miRNA:   3'- -GCGCaGCU-CCGCua--GCGGCaACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 42107 0.69 0.354242
Target:  5'- cCGCGUCGAcgaacgaggacuuguGGCGAUC-CUGgc-GCGCa -3'
miRNA:   3'- -GCGCAGCU---------------CCGCUAGcGGCaacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 8869 0.68 0.359256
Target:  5'- gCGCccGUCGAGaucGCGA-CGCCGUacGCGCu -3'
miRNA:   3'- -GCG--CAGCUC---CGCUaGCGGCAacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 14206 0.7 0.296519
Target:  5'- gCGCGgccUCGgacaGGGCGGcgccgCGCUGUUcGGCGCg -3'
miRNA:   3'- -GCGC---AGC----UCCGCUa----GCGGCAA-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 5938 0.7 0.289304
Target:  5'- uGUGUcgggCGAGGUGAUCGauaagcUCGcUGGCGCg -3'
miRNA:   3'- gCGCA----GCUCCGCUAGC------GGCaACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33736 0.7 0.282929
Target:  5'- uCGCGgCGAGGaucaGcgCGCCGgccuucacgagcaucUGGCGCg -3'
miRNA:   3'- -GCGCaGCUCCg---CuaGCGGCa--------------ACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 964 0.77 0.102665
Target:  5'- gGCGUgcagcaCGAGGUGAUCGCCGacacGCGCa -3'
miRNA:   3'- gCGCA------GCUCCGCUAGCGGCaac-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 7211 0.74 0.150906
Target:  5'- uCGCGUgCGcAGGCGcuGUCGgCGUcgGGCGCa -3'
miRNA:   3'- -GCGCA-GC-UCCGC--UAGCgGCAa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 10212 0.74 0.150906
Target:  5'- uCGCGUCGAuGCccgCGCCGgacGGCGCg -3'
miRNA:   3'- -GCGCAGCUcCGcuaGCGGCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 15616 0.74 0.159289
Target:  5'- gGCGUCGcgcagcAGGCGGccgggcUCGCCGaucagGGCGCc -3'
miRNA:   3'- gCGCAGC------UCCGCU------AGCGGCaa---CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 32290 0.72 0.218885
Target:  5'- ----aCGGGGCGAUCGUCGggccagccGGCGCg -3'
miRNA:   3'- gcgcaGCUCCGCUAGCGGCaa------CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 7109 0.71 0.235896
Target:  5'- gCGCGUggucuaaCGAGGCGGggcggCGCUGc-GGCGCc -3'
miRNA:   3'- -GCGCA-------GCUCCGCUa----GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 16523 0.71 0.242633
Target:  5'- uCGCGUCGccGCcggCGCCGagugGGCGCg -3'
miRNA:   3'- -GCGCAGCucCGcuaGCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 11116 0.71 0.261822
Target:  5'- gCGCG-CGAagcuGGcCGAggCGCCGUggcGGCGCa -3'
miRNA:   3'- -GCGCaGCU----CC-GCUa-GCGGCAa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.