miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28180 5' -58.6 NC_005887.1 + 34842 0.66 0.520141
Target:  5'- aCGC-UCGGGGuCGugcCGCCGagGGUGUa -3'
miRNA:   3'- -GCGcAGCUCC-GCua-GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 39917 0.68 0.402929
Target:  5'- gCGCG-CGAGGUGucauUCGUC---GGCGCg -3'
miRNA:   3'- -GCGCaGCUCCGCu---AGCGGcaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 30220 0.68 0.359256
Target:  5'- gCGCG-CGAcGGCGGccUGCuCGUccUGGCGCu -3'
miRNA:   3'- -GCGCaGCU-CCGCUa-GCG-GCA--ACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 6305 0.76 0.11795
Target:  5'- gCGCGUCGAGGCcuugCGCCucgccGGCGCc -3'
miRNA:   3'- -GCGCAGCUCCGcua-GCGGcaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 39409 0.66 0.479356
Target:  5'- --gGUCGcGGCGGU-GCCGc-GGCGCu -3'
miRNA:   3'- gcgCAGCuCCGCUAgCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 37551 0.66 0.469403
Target:  5'- uGCG-CGAGauccGCGAgcacggccUCGCCGgcUGGCGUc -3'
miRNA:   3'- gCGCaGCUC----CGCU--------AGCGGCa-ACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 1597 0.66 0.469403
Target:  5'- gCGCGgcgCGccaacGGCGAUCGCCucgacgcgGGCGg -3'
miRNA:   3'- -GCGCa--GCu----CCGCUAGCGGcaa-----CCGCg -5'
28180 5' -58.6 NC_005887.1 + 41451 0.67 0.459556
Target:  5'- aCGCGgaucgaagcCGAGGCcgccuGAcUCGuCCGgcGGCGCg -3'
miRNA:   3'- -GCGCa--------GCUCCG-----CU-AGC-GGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33095 0.67 0.4402
Target:  5'- cCGUGcacagauaGAcGCGAUCGCCGacgcGGCGCa -3'
miRNA:   3'- -GCGCag------CUcCGCUAGCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 27909 0.67 0.412059
Target:  5'- aCG-GUCu-GGuCGAUCGCgGUUGcGCGCg -3'
miRNA:   3'- -GCgCAGcuCC-GCUAGCGgCAAC-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 39148 0.67 0.430697
Target:  5'- aGCGcUCGcGGCccuucUCGCUGUccgGGCGCg -3'
miRNA:   3'- gCGC-AGCuCCGcu---AGCGGCAa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 36925 0.67 0.459556
Target:  5'- gCGCGUgGucGCGccgGUCGCUGc-GGCGCc -3'
miRNA:   3'- -GCGCAgCucCGC---UAGCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 6502 0.66 0.499563
Target:  5'- aGCGcaaucCGcAGGCGAUgaucuaCGCCGacgcGGCGCa -3'
miRNA:   3'- gCGCa----GC-UCCGCUA------GCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 40868 0.67 0.421316
Target:  5'- cCGCG-CGAGcGCcgcaCGCCGUcGGCGUc -3'
miRNA:   3'- -GCGCaGCUC-CGcua-GCGGCAaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 40673 0.66 0.499563
Target:  5'- uCGUGcUCGGGGCGAUCGa-----GCGCg -3'
miRNA:   3'- -GCGC-AGCUCCGCUAGCggcaacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 37213 0.67 0.459556
Target:  5'- cCGaCGUCGGGcagcGCGGUCauGCCGagcUUGGCGa -3'
miRNA:   3'- -GC-GCAGCUC----CGCUAG--CGGC---AACCGCg -5'
28180 5' -58.6 NC_005887.1 + 24120 0.67 0.421316
Target:  5'- gGCGUggcCGAGGCGAUCaCCuucGuGCGCa -3'
miRNA:   3'- gCGCA---GCUCCGCUAGcGGcaaC-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 14564 0.68 0.367721
Target:  5'- uGCGUCGGcGCcGUCGUCa-UGGCGCu -3'
miRNA:   3'- gCGCAGCUcCGcUAGCGGcaACCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33877 0.66 0.479356
Target:  5'- aCGUGUCGucgccGaGCGGUugCGCCG--GGCGCu -3'
miRNA:   3'- -GCGCAGCu----C-CGCUA--GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 31020 0.66 0.469403
Target:  5'- aGCGUaccGGCcGUCGCgGUUgcGGCGCu -3'
miRNA:   3'- gCGCAgcuCCGcUAGCGgCAA--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.