Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28181 | 5' | -63.4 | NC_005887.1 | + | 455 | 0.74 | 0.06725 |
Target: 5'- cUGGCG-CGUGUGGUGCGGGcaUGAGCa -3' miRNA: 3'- -ACCGCgGCGCGCCACGUCCa-GCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 1095 | 0.66 | 0.241617 |
Target: 5'- cGGCGCCauuGCcgacgccgagcagguGCGuGUGCuuGUCGAGCUc -3' miRNA: 3'- aCCGCGG---CG---------------CGC-CACGucCAGCUCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 1234 | 0.66 | 0.243454 |
Target: 5'- gGGCGCUGCGCGGcGCucagcacgcgaaaacGUCGcauAGCUa -3' miRNA: 3'- aCCGCGGCGCGCCaCGuc-------------CAGC---UCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 1391 | 0.67 | 0.227334 |
Target: 5'- aGGC-CCGCGCcgaaGC-GGUCGAGCa -3' miRNA: 3'- aCCGcGGCGCGcca-CGuCCAGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 1494 | 0.7 | 0.120387 |
Target: 5'- cGGCGCuCGCGCGGcGC-GGcCGuGCg -3' miRNA: 3'- aCCGCG-GCGCGCCaCGuCCaGCuCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 1671 | 0.67 | 0.210493 |
Target: 5'- cGuGCGCgCGCGCcaGGUGCAGGaUGGuGCg -3' miRNA: 3'- aC-CGCG-GCGCG--CCACGUCCaGCU-CGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 6477 | 0.68 | 0.180024 |
Target: 5'- gGGCGCgGCgucGCGGUGUcuGcCGAGCg -3' miRNA: 3'- aCCGCGgCG---CGCCACGucCaGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 6822 | 0.68 | 0.180024 |
Target: 5'- cUGGCGCUaCGUGGcGCGGGUCu-GCa -3' miRNA: 3'- -ACCGCGGcGCGCCaCGUCCAGcuCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 6990 | 0.69 | 0.149474 |
Target: 5'- aGGC-CCGCGUGGUGCcGGgcgUGaAGCUc -3' miRNA: 3'- aCCGcGGCGCGCCACGuCCa--GC-UCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 9891 | 0.67 | 0.215984 |
Target: 5'- aGGauCCaGC-CGGUGCAGGUCG-GCg -3' miRNA: 3'- aCCgcGG-CGcGCCACGUCCAGCuCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 11001 | 0.71 | 0.113673 |
Target: 5'- aUGGCGUgGUGCucgGGUGCGgcggucuGGUCGAGUg -3' miRNA: 3'- -ACCGCGgCGCG---CCACGU-------CCAGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 11553 | 0.67 | 0.215984 |
Target: 5'- cGGCGCgcagCGCGCGGcggucGCGGaaUCGGGCUu -3' miRNA: 3'- aCCGCG----GCGCGCCa----CGUCc-AGCUCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 11583 | 0.69 | 0.161944 |
Target: 5'- aGGaacuCGCCGCGC---GCAcGGUCGAGCUg -3' miRNA: 3'- aCC----GCGGCGCGccaCGU-CCAGCUCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 12058 | 0.78 | 0.031232 |
Target: 5'- aGGCGCCGCGCuGcaGCAGGUCG-GCa -3' miRNA: 3'- aCCGCGGCGCGcCa-CGUCCAGCuCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 13146 | 0.68 | 0.186764 |
Target: 5'- gGGCcucgucucgucgcuuGCCGCGCGcGcGCAgacagcgggagcGGUCGAGCa -3' miRNA: 3'- aCCG---------------CGGCGCGC-CaCGU------------CCAGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 14643 | 0.68 | 0.175343 |
Target: 5'- cGGCaGCCgGCGCGGUGCugcccgucgccGGUuCGAcGCUg -3' miRNA: 3'- aCCG-CGG-CGCGCCACGu----------CCA-GCU-CGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 14696 | 0.7 | 0.137883 |
Target: 5'- gGGCucGUCGCgGCGG-GCGGGcCGGGCg -3' miRNA: 3'- aCCG--CGGCG-CGCCaCGUCCaGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 15615 | 0.69 | 0.161944 |
Target: 5'- gGGCGUCGCGCa--GCAGGcggcCGGGCUc -3' miRNA: 3'- aCCGCGGCGCGccaCGUCCa---GCUCGA- -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 16769 | 0.66 | 0.239186 |
Target: 5'- gGGCGCgauCGaCGCGaUGaAGGUCGGGCa -3' miRNA: 3'- aCCGCG---GC-GCGCcACgUCCAGCUCGa -5' |
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28181 | 5' | -63.4 | NC_005887.1 | + | 17290 | 0.68 | 0.180024 |
Target: 5'- cGGCGCCGCGCGcGcaaacGCcGGUUcGGCg -3' miRNA: 3'- aCCGCGGCGCGC-Ca----CGuCCAGcUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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