miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28181 5' -63.4 NC_005887.1 + 24125 0.66 0.239186
Target:  5'- cGcGUGUCGUGCGGUGUgaAGcGcCGGGCUu -3'
miRNA:   3'- aC-CGCGGCGCGCCACG--UC-CaGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 14643 0.68 0.175343
Target:  5'- cGGCaGCCgGCGCGGUGCugcccgucgccGGUuCGAcGCUg -3'
miRNA:   3'- aCCG-CGG-CGCGCCACGu----------CCA-GCU-CGA- -5'
28181 5' -63.4 NC_005887.1 + 6822 0.68 0.180024
Target:  5'- cUGGCGCUaCGUGGcGCGGGUCu-GCa -3'
miRNA:   3'- -ACCGCGGcGCGCCaCGUCCAGcuCGa -5'
28181 5' -63.4 NC_005887.1 + 17290 0.68 0.180024
Target:  5'- cGGCGCCGCGCGcGcaaacGCcGGUUcGGCg -3'
miRNA:   3'- aCCGCGGCGCGC-Ca----CGuCCAGcUCGa -5'
28181 5' -63.4 NC_005887.1 + 13146 0.68 0.186764
Target:  5'- gGGCcucgucucgucgcuuGCCGCGCGcGcGCAgacagcgggagcGGUCGAGCa -3'
miRNA:   3'- aCCG---------------CGGCGCGC-CaCGU------------CCAGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 25136 0.67 0.210493
Target:  5'- -aGCGCCGCaGC--UGCAGGucgUCGAGCa -3'
miRNA:   3'- acCGCGGCG-CGccACGUCC---AGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 9891 0.67 0.215984
Target:  5'- aGGauCCaGC-CGGUGCAGGUCG-GCg -3'
miRNA:   3'- aCCgcGG-CGcGCCACGUCCAGCuCGa -5'
28181 5' -63.4 NC_005887.1 + 11553 0.67 0.215984
Target:  5'- cGGCGCgcagCGCGCGGcggucGCGGaaUCGGGCUu -3'
miRNA:   3'- aCCGCG----GCGCGCCa----CGUCc-AGCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 26420 0.67 0.233197
Target:  5'- cUGGCgGCCGCGCGGgaacgcgcgcUGCAGccgcgCGAGa- -3'
miRNA:   3'- -ACCG-CGGCGCGCC----------ACGUCca---GCUCga -5'
28181 5' -63.4 NC_005887.1 + 32709 0.69 0.166305
Target:  5'- cGGauaGCCGCGCGGUucacccacgGCGGGguagCGcGGCg -3'
miRNA:   3'- aCCg--CGGCGCGCCA---------CGUCCa---GC-UCGa -5'
28181 5' -63.4 NC_005887.1 + 15615 0.69 0.161944
Target:  5'- gGGCGUCGCGCa--GCAGGcggcCGGGCUc -3'
miRNA:   3'- aCCGCGGCGCGccaCGUCCa---GCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 37399 0.7 0.13938
Target:  5'- cUGGCGCUGCGCGGUcGCgacugccugcacgccAGGUgCgGAGUg -3'
miRNA:   3'- -ACCGCGGCGCGCCA-CG---------------UCCA-G-CUCGa -5'
28181 5' -63.4 NC_005887.1 + 12058 0.78 0.031232
Target:  5'- aGGCGCCGCGCuGcaGCAGGUCG-GCa -3'
miRNA:   3'- aCCGCGGCGCGcCa-CGUCCAGCuCGa -5'
28181 5' -63.4 NC_005887.1 + 455 0.74 0.06725
Target:  5'- cUGGCG-CGUGUGGUGCGGGcaUGAGCa -3'
miRNA:   3'- -ACCGCgGCGCGCCACGUCCa-GCUCGa -5'
28181 5' -63.4 NC_005887.1 + 36975 0.73 0.077366
Target:  5'- cGGCGUCGCGCGGgucgagcucGCcGG-CGAGCa -3'
miRNA:   3'- aCCGCGGCGCGCCa--------CGuCCaGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 29738 0.72 0.099344
Target:  5'- -cGCGCCGCGC-GUGCAcGGUcuugcccggCGAGCUg -3'
miRNA:   3'- acCGCGGCGCGcCACGU-CCA---------GCUCGA- -5'
28181 5' -63.4 NC_005887.1 + 26088 0.71 0.110904
Target:  5'- cGGC-CCGCGCGGcGUuucauGGcGUCGAGCa -3'
miRNA:   3'- aCCGcGGCGCGCCaCG-----UC-CAGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 11001 0.71 0.113673
Target:  5'- aUGGCGUgGUGCucgGGUGCGgcggucuGGUCGAGUg -3'
miRNA:   3'- -ACCGCGgCGCG---CCACGU-------CCAGCUCGa -5'
28181 5' -63.4 NC_005887.1 + 1494 0.7 0.120387
Target:  5'- cGGCGCuCGCGCGGcGC-GGcCGuGCg -3'
miRNA:   3'- aCCGCG-GCGCGCCaCGuCCaGCuCGa -5'
28181 5' -63.4 NC_005887.1 + 14696 0.7 0.137883
Target:  5'- gGGCucGUCGCgGCGG-GCGGGcCGGGCg -3'
miRNA:   3'- aCCG--CGGCG-CGCCaCGUCCaGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.