miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 54696 0.69 0.913559
Target:  5'- --cCGAggcAGAACuCGUGCGCGCaaugguggacuGCGCGCa -3'
miRNA:   3'- agaGCU---UUUUG-GCGCGUGUG-----------CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 60137 0.71 0.816623
Target:  5'- cCUCGAgggcccugAGAGCCGCuuccgcCGC-CGCGCGCc -3'
miRNA:   3'- aGAGCU--------UUUUGGCGc-----GUGuGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 60852 0.69 0.907463
Target:  5'- cUUUGAcAGAcgcuCCGCGUACAUGCGCcuGCg -3'
miRNA:   3'- aGAGCUuUUU----GGCGCGUGUGCGCG--CG- -5'
2819 3' -52.9 NC_001491.2 + 60900 0.66 0.976225
Target:  5'- uUCUCuuc--GCUGUucGCGCACGCaGCGCc -3'
miRNA:   3'- -AGAGcuuuuUGGCG--CGUGUGCG-CGCG- -5'
2819 3' -52.9 NC_001491.2 + 61013 0.73 0.741617
Target:  5'- gCUCGAcucaccGCCGCGCAaaaccCGCGCcugGCGCa -3'
miRNA:   3'- aGAGCUuuu---UGGCGCGU-----GUGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 64730 0.67 0.957426
Target:  5'- gCUgGGGAAACCGCG-GCcucgGCGUGgGCa -3'
miRNA:   3'- aGAgCUUUUUGGCGCgUG----UGCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 65775 0.66 0.970808
Target:  5'- --cCGGAGAgcgcucACCGCGCcCAgGCgaGCGCa -3'
miRNA:   3'- agaGCUUUU------UGGCGCGuGUgCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 67487 0.7 0.865915
Target:  5'- --aCGAGGugcuuGCCGCGCACgACGC-CGUa -3'
miRNA:   3'- agaGCUUUu----UGGCGCGUG-UGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 67608 0.69 0.913559
Target:  5'- gCUCGcGAucAGCCGCaGCAC-CGCGCu- -3'
miRNA:   3'- aGAGCuUU--UUGGCG-CGUGuGCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 68218 0.68 0.949371
Target:  5'- gCUCgGAAAggUCGgGUACgaguucaacgGCGCGCGUc -3'
miRNA:   3'- aGAG-CUUUuuGGCgCGUG----------UGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 68568 0.69 0.907463
Target:  5'- gUUUGu-GAGCCGCGC-CGCGgGCGg -3'
miRNA:   3'- aGAGCuuUUUGGCGCGuGUGCgCGCg -5'
2819 3' -52.9 NC_001491.2 + 68748 0.74 0.680962
Target:  5'- cCUCGAAGAuGCCGCGCGugcaGCGgagaGCGCc -3'
miRNA:   3'- aGAGCUUUU-UGGCGCGUg---UGCg---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 72925 0.67 0.961105
Target:  5'- --gCGAu--GCCGUGCACAUaGcCGUGCa -3'
miRNA:   3'- agaGCUuuuUGGCGCGUGUG-C-GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 82634 0.7 0.865915
Target:  5'- --gUGAGAGccugcACCGCGCGCGCuaccagcCGCGCg -3'
miRNA:   3'- agaGCUUUU-----UGGCGCGUGUGc------GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 82751 0.67 0.96779
Target:  5'- --aCcAGAGACCGCGC-CACGC-CGUu -3'
miRNA:   3'- agaGcUUUUUGGCGCGuGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 84838 0.66 0.980866
Target:  5'- gUC-CGcuGGAACUGUcgGCACAaGCGCGCu -3'
miRNA:   3'- -AGaGCu-UUUUGGCG--CGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 86104 0.75 0.63957
Target:  5'- aCUCGAuuAGCUGCG-ACAuccuagguucCGCGCGCa -3'
miRNA:   3'- aGAGCUuuUUGGCGCgUGU----------GCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 86164 0.67 0.964558
Target:  5'- gCUCGggGGcgcGCUGCGC-CACGCugaugaugcaGuCGCg -3'
miRNA:   3'- aGAGCuuUU---UGGCGCGuGUGCG----------C-GCG- -5'
2819 3' -52.9 NC_001491.2 + 90267 0.67 0.964558
Target:  5'- --cCGAu--GCCGaggcuaGCuuGCGCGCGCa -3'
miRNA:   3'- agaGCUuuuUGGCg-----CGugUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 95220 0.66 0.973617
Target:  5'- --aCGuGAAcGCUGCGCuCGcCGCGCGCc -3'
miRNA:   3'- agaGC-UUUuUGGCGCGuGU-GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.