miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 4730 0.67 0.957426
Target:  5'- cCUCGAGGcgauagaCGCGCACAaGCG-GCg -3'
miRNA:   3'- aGAGCUUUuug----GCGCGUGUgCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 5802 0.71 0.842152
Target:  5'- uUCUCGGcgu-CCcCGCA-GCGCGCGCa -3'
miRNA:   3'- -AGAGCUuuuuGGcGCGUgUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 9524 0.68 0.940362
Target:  5'- uUCUa-GAGGGCCGUGCGcCugGCGCu- -3'
miRNA:   3'- -AGAgcUUUUUGGCGCGU-GugCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 14175 0.68 0.949371
Target:  5'- cCUCuggGAAGGGCuCGuCGC-CAUGCGCGUu -3'
miRNA:   3'- aGAG---CUUUUUG-GC-GCGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 15489 0.72 0.798728
Target:  5'- -aUCGGAGcuCCGC-CGCGCGCGcCGUg -3'
miRNA:   3'- agAGCUUUuuGGCGcGUGUGCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 21674 0.75 0.629185
Target:  5'- aCUUGcgGGGCCGCgGCACugGCGCu- -3'
miRNA:   3'- aGAGCuuUUUGGCG-CGUGugCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 22849 0.66 0.978639
Target:  5'- aCUcCGAAucuAACUacCGCACACG-GCGCg -3'
miRNA:   3'- aGA-GCUUu--UUGGc-GCGUGUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 23272 0.69 0.919411
Target:  5'- cUUCGc--AAgCGCGCAacggGCGCGCGCc -3'
miRNA:   3'- aGAGCuuuUUgGCGCGUg---UGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 28386 0.67 0.964558
Target:  5'- aUUUGAucAGCCGCGacgaggcgaucCACACuCGCGCc -3'
miRNA:   3'- aGAGCUuuUUGGCGC-----------GUGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 28615 0.69 0.894546
Target:  5'- gUUUGGAAAcgaCGCaGC-CGCGCGCGCu -3'
miRNA:   3'- aGAGCUUUUug-GCG-CGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 29394 0.71 0.850279
Target:  5'- --cCGGGAGugCGCGCGCcUGCagGCGCu -3'
miRNA:   3'- agaGCUUUUugGCGCGUGuGCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 30882 0.68 0.944987
Target:  5'- -aUgGAGGAACCG-GCuaugGCGCGCGUGUu -3'
miRNA:   3'- agAgCUUUUUGGCgCG----UGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 31028 0.73 0.751437
Target:  5'- cCUCGGAGuACCGCGaGC-UGUGCGCc -3'
miRNA:   3'- aGAGCUUUuUGGCGCgUGuGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 35516 0.66 0.973617
Target:  5'- --aCGGAGggUCGUucggGCACugGCauGCGCg -3'
miRNA:   3'- agaGCUUUuuGGCG----CGUGugCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 37037 0.7 0.865915
Target:  5'- gUCUCGAAAAcaCGCaGCAUA-GCGCGUu -3'
miRNA:   3'- -AGAGCUUUUugGCG-CGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 37368 0.66 0.980866
Target:  5'- cUCUCGGuGGGACCGCacGUaacaaaaaauACAaGCGCGCc -3'
miRNA:   3'- -AGAGCU-UUUUGGCG--CG----------UGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 38224 0.66 0.973617
Target:  5'- --gCGAGu--CCGUGCGgGucCGCGCGCc -3'
miRNA:   3'- agaGCUUuuuGGCGCGUgU--GCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 38684 0.75 0.63957
Target:  5'- gUCUCGugccaauGAGGCguuugUGCGCGuCGCGCGCGCc -3'
miRNA:   3'- -AGAGCu------UUUUG-----GCGCGU-GUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 40214 0.66 0.970808
Target:  5'- cCUCGGAAGACaCGUGU-UugGCG-GCg -3'
miRNA:   3'- aGAGCUUUUUG-GCGCGuGugCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 50224 0.68 0.935493
Target:  5'- aUCUCGcuuAAAGCgGCGUAgCGCGagccaguguuCGCGCg -3'
miRNA:   3'- -AGAGCu--UUUUGgCGCGU-GUGC----------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.