miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 123384 1.13 0.003597
Target:  5'- gUCUCGAAAAACCGCGCACACGCGCGCu -3'
miRNA:   3'- -AGAGCUUUUUGGCGCGUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 140367 0.85 0.209511
Target:  5'- cUCgCGGAGGGCCGCGCGCAaucaGUGCGCc -3'
miRNA:   3'- -AGaGCUUUUUGGCGCGUGUg---CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 135072 0.8 0.362394
Target:  5'- gCUCGAAAGauucGCCaucaGCGUACACGCGCGa -3'
miRNA:   3'- aGAGCUUUU----UGG----CGCGUGUGCGCGCg -5'
2819 3' -52.9 NC_001491.2 + 115888 0.79 0.422105
Target:  5'- cCUCGGAcGACCGUGCcaucCACGgGCGCc -3'
miRNA:   3'- aGAGCUUuUUGGCGCGu---GUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 122870 0.76 0.546837
Target:  5'- --cCGGGAGAUCGgGCGCACugauuGCGCGCg -3'
miRNA:   3'- agaGCUUUUUGGCgCGUGUG-----CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 21674 0.75 0.629185
Target:  5'- aCUUGcgGGGCCGCgGCACugGCGCu- -3'
miRNA:   3'- aGAGCuuUUUGGCG-CGUGugCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 38684 0.75 0.63957
Target:  5'- gUCUCGugccaauGAGGCguuugUGCGCGuCGCGCGCGCc -3'
miRNA:   3'- -AGAGCu------UUUUG-----GCGCGU-GUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 86104 0.75 0.63957
Target:  5'- aCUCGAuuAGCUGCG-ACAuccuagguucCGCGCGCa -3'
miRNA:   3'- aGAGCUuuUUGGCGCgUGU----------GCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 147631 0.75 0.649949
Target:  5'- gCUCGggGggacaguaGGCCGCGCAagcCGCGuCGCu -3'
miRNA:   3'- aGAGCuuU--------UUGGCGCGUgu-GCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 68748 0.74 0.680962
Target:  5'- cCUCGAAGAuGCCGCGCGugcaGCGgagaGCGCc -3'
miRNA:   3'- aGAGCUUUU-UGGCGCGUg---UGCg---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 121571 0.73 0.72169
Target:  5'- --cCGggGAGCCucGCGgGCACGCGCa- -3'
miRNA:   3'- agaGCuuUUUGG--CGCgUGUGCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 61013 0.73 0.741617
Target:  5'- gCUCGAcucaccGCCGCGCAaaaccCGCGCcugGCGCa -3'
miRNA:   3'- aGAGCUuuu---UGGCGCGU-----GUGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 31028 0.73 0.751437
Target:  5'- cCUCGGAGuACCGCGaGC-UGUGCGCc -3'
miRNA:   3'- aGAGCUUUuUGGCGCgUGuGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114867 0.72 0.770745
Target:  5'- uUCgCGAgggccGAGGCCGCGUu--CGCGCGCc -3'
miRNA:   3'- -AGaGCU-----UUUUGGCGCGuguGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114646 0.72 0.780212
Target:  5'- cUUUGAGGAgggcGCCGCGCAgagcCAC-CGCGCg -3'
miRNA:   3'- aGAGCUUUU----UGGCGCGU----GUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 15489 0.72 0.798728
Target:  5'- -aUCGGAGcuCCGC-CGCGCGCGcCGUg -3'
miRNA:   3'- agAGCUUUuuGGCGcGUGUGCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 148593 0.72 0.798728
Target:  5'- -aUCGGuuGGCCGCGCgguggcucuGCGCG-GCGCc -3'
miRNA:   3'- agAGCUuuUUGGCGCG---------UGUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 124458 0.72 0.807757
Target:  5'- --cCGc--AGCCGCGCGCACGUGUcuGCa -3'
miRNA:   3'- agaGCuuuUUGGCGCGUGUGCGCG--CG- -5'
2819 3' -52.9 NC_001491.2 + 60137 0.71 0.816623
Target:  5'- cCUCGAgggcccugAGAGCCGCuuccgcCGC-CGCGCGCc -3'
miRNA:   3'- aGAGCU--------UUUUGGCGc-----GUGuGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 146324 0.71 0.823592
Target:  5'- cUCUCGGGuaggccauguCCGCGUAgGCGCGC-Cg -3'
miRNA:   3'- -AGAGCUUuuu-------GGCGCGUgUGCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.