miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28207 3' -52.9 NC_005891.1 + 10513 0.66 0.775524
Target:  5'- cGGUGUCGGCGUCuccuuuGgAgCCUGCUc- -3'
miRNA:   3'- cCCACAGCUGCAGc-----UgUgGGAUGAau -5'
28207 3' -52.9 NC_005891.1 + 29606 0.66 0.775524
Target:  5'- uGGGUGUUGAgGcguuUCGACACUUUgauuugcgACUUAg -3'
miRNA:   3'- -CCCACAGCUgC----AGCUGUGGGA--------UGAAU- -5'
28207 3' -52.9 NC_005891.1 + 20205 0.66 0.743762
Target:  5'- cGGGUGaCGACGgucUGcCACCUUACa-- -3'
miRNA:   3'- -CCCACaGCUGCa--GCuGUGGGAUGaau -5'
28207 3' -52.9 NC_005891.1 + 22549 0.68 0.620577
Target:  5'- gGGGUuccCGACGUgGACGCCUU-CUUGg -3'
miRNA:   3'- -CCCAca-GCUGCAgCUGUGGGAuGAAU- -5'
28207 3' -52.9 NC_005891.1 + 34163 0.68 0.643321
Target:  5'- uGGGUGUUGuAUGUCGAaaCACCCcaaggGCa-- -3'
miRNA:   3'- -CCCACAGC-UGCAGCU--GUGGGa----UGaau -5'
28207 3' -52.9 NC_005891.1 + 9012 0.68 0.677325
Target:  5'- -uGUGUCGAUGUCGACAUaCUuccGCUUu -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGgGA---UGAAu -5'
28207 3' -52.9 NC_005891.1 + 1148 0.69 0.5753
Target:  5'- -aGUGUCGACGUCGACACa------- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGggaugaau -5'
28207 3' -52.9 NC_005891.1 + 14587 0.69 0.597876
Target:  5'- uGGUGUUGAgGUCGACcgcaccauugacGCCCUAg--- -3'
miRNA:   3'- cCCACAGCUgCAGCUG------------UGGGAUgaau -5'
28207 3' -52.9 NC_005891.1 + 37979 0.72 0.426216
Target:  5'- uGGUGUCGACgGUCGACACaCCc----- -3'
miRNA:   3'- cCCACAGCUG-CAGCUGUG-GGaugaau -5'
28207 3' -52.9 NC_005891.1 + 1092 0.73 0.378699
Target:  5'- -uGUGUCGACGUCGACACUauucccgaUGCa-- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGGg-------AUGaau -5'
28207 3' -52.9 NC_005891.1 + 37918 0.74 0.318407
Target:  5'- gGGGUGuUCGAcCGUCGACACCaUugUUc -3'
miRNA:   3'- -CCCAC-AGCU-GCAGCUGUGGgAugAAu -5'
28207 3' -52.9 NC_005891.1 + 6989 0.76 0.232418
Target:  5'- gGGuGUGUCGACaUCGACACaCCUAUUUu -3'
miRNA:   3'- -CC-CACAGCUGcAGCUGUG-GGAUGAAu -5'
28207 3' -52.9 NC_005891.1 + 36170 0.76 0.232418
Target:  5'- -uGUGUCGACGUCGACACCgccuUUGCg-- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGG----GAUGaau -5'
28207 3' -52.9 NC_005891.1 + 7051 0.78 0.186615
Target:  5'- aGGuGUGUCGAUGUCGACacACCCUAa--- -3'
miRNA:   3'- -CC-CACAGCUGCAGCUG--UGGGAUgaau -5'
28207 3' -52.9 NC_005891.1 + 33179 0.82 0.105328
Target:  5'- -uGUGUCGACGUCGACACCCa----- -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGGGaugaau -5'
28207 3' -52.9 NC_005891.1 + 33237 0.84 0.069651
Target:  5'- uGGGUGUCGACGUCGACACaCUGgUa- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGgGAUgAau -5'
28207 3' -52.9 NC_005891.1 + 36227 0.84 0.071758
Target:  5'- cGGUGUCGACGUCGACACaCUGCc-- -3'
miRNA:   3'- cCCACAGCUGCAGCUGUGgGAUGaau -5'
28207 3' -52.9 NC_005891.1 + 16833 0.85 0.059981
Target:  5'- aGGGUGUCGACGUCGACACaCCcgaacaggucgUGCUa- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUG-GG-----------AUGAau -5'
28207 3' -52.9 NC_005891.1 + 16893 0.88 0.040539
Target:  5'- gGGuGUGUCGACGUCGACACCCUcccccucagGCUUc -3'
miRNA:   3'- -CC-CACAGCUGCAGCUGUGGGA---------UGAAu -5'
28207 3' -52.9 NC_005891.1 + 34707 0.93 0.017262
Target:  5'- aGGGUGUCGACGUCGACACCCa----- -3'
miRNA:   3'- -CCCACAGCUGCAGCUGUGGGaugaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.