miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28219 3' -48.9 NC_005891.1 + 9816 0.7 0.717044
Target:  5'- --cGCGGCACuggacgGGCUACAAGCAUCUa- -3'
miRNA:   3'- uguCGUCGUG------UUGAUGUUUGUGGAcg -5'
28219 3' -48.9 NC_005891.1 + 13751 1.12 0.001603
Target:  5'- gACAGCAGCACAACUACAAACACCUGCc -3'
miRNA:   3'- -UGUCGUCGUGUUGAUGUUUGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 21374 0.66 0.917892
Target:  5'- gGCAGCAGgAUGGCUAC---CAUgUGCc -3'
miRNA:   3'- -UGUCGUCgUGUUGAUGuuuGUGgACG- -5'
28219 3' -48.9 NC_005891.1 + 23597 0.66 0.911052
Target:  5'- cGCAGUAGCGaGACUGCGc-CGCCacuucgauuuggUGCa -3'
miRNA:   3'- -UGUCGUCGUgUUGAUGUuuGUGG------------ACG- -5'
28219 3' -48.9 NC_005891.1 + 35872 0.66 0.908938
Target:  5'- uGCuGCAGCGCAACggcGCGGAUugaACCauucuuuuuggcugUGCg -3'
miRNA:   3'- -UGuCGUCGUGUUGa--UGUUUG---UGG--------------ACG- -5'
28219 3' -48.9 NC_005891.1 + 21323 0.67 0.872098
Target:  5'- aAUGGCGGUGCGACUugGAcagggaaaaACAUCgGCu -3'
miRNA:   3'- -UGUCGUCGUGUUGAugUU---------UGUGGaCG- -5'
28219 3' -48.9 NC_005891.1 + 1454 0.68 0.835622
Target:  5'- cGCAGCuucGCGuaggUAACUAUAAGCACauaCUGCc -3'
miRNA:   3'- -UGUCGu--CGU----GUUGAUGUUUGUG---GACG- -5'
28219 3' -48.9 NC_005891.1 + 3617 0.68 0.835622
Target:  5'- -aGGCGGUu--ACUACgAAAUGCCUGCc -3'
miRNA:   3'- ugUCGUCGuguUGAUG-UUUGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 28373 0.68 0.825843
Target:  5'- -aGGUAGUcaaGGCUAUAGuCACCUGCu -3'
miRNA:   3'- ugUCGUCGug-UUGAUGUUuGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 5525 0.68 0.824852
Target:  5'- aACAGaCGGCACAagcguuGCUucaaaaaACGGGCGcuCCUGCg -3'
miRNA:   3'- -UGUC-GUCGUGU------UGA-------UGUUUGU--GGACG- -5'
28219 3' -48.9 NC_005891.1 + 11127 0.69 0.784449
Target:  5'- uCGGCGGCGCAggcggcaauaACUccGCGAACACaggcgGCg -3'
miRNA:   3'- uGUCGUCGUGU----------UGA--UGUUUGUGga---CG- -5'
28219 3' -48.9 NC_005891.1 + 10624 0.69 0.784449
Target:  5'- uGCAGaaCGGCGgAACUACuuAUACCUcGCc -3'
miRNA:   3'- -UGUC--GUCGUgUUGAUGuuUGUGGA-CG- -5'
28219 3' -48.9 NC_005891.1 + 8782 0.72 0.610173
Target:  5'- gUAGuCGGCGCucuugcuACUACGAACGCC-GCg -3'
miRNA:   3'- uGUC-GUCGUGu------UGAUGUUUGUGGaCG- -5'
28219 3' -48.9 NC_005891.1 + 15024 0.71 0.634094
Target:  5'- cGCAGCAGgGuCGGCgaaguCAAACGgCUGCa -3'
miRNA:   3'- -UGUCGUCgU-GUUGau---GUUUGUgGACG- -5'
28219 3' -48.9 NC_005891.1 + 37271 0.71 0.658006
Target:  5'- -uGGUcGCAgAGC-ACAAACACCUGUa -3'
miRNA:   3'- ugUCGuCGUgUUGaUGUUUGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 33474 0.7 0.693626
Target:  5'- -uGGCGGCAgGuagaUGCGAugacGCACCUGCc -3'
miRNA:   3'- ugUCGUCGUgUug--AUGUU----UGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 29868 0.7 0.728612
Target:  5'- gACAGCugAGCGCAAC-GCAGAUACaaacgGCu -3'
miRNA:   3'- -UGUCG--UCGUGUUGaUGUUUGUGga---CG- -5'
28219 3' -48.9 NC_005891.1 + 11048 0.7 0.740067
Target:  5'- -aAGUAGUAC--CUACGuucgguGCACCUGCg -3'
miRNA:   3'- ugUCGUCGUGuuGAUGUu-----UGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 16328 0.68 0.845148
Target:  5'- uCAGCGGCuccAUggUUugGGaagcgaacGCACCUGCa -3'
miRNA:   3'- uGUCGUCG---UGuuGAugUU--------UGUGGACG- -5'
28219 3' -48.9 NC_005891.1 + 21715 0.67 0.863397
Target:  5'- cAUAGCuucCACAGauuCAGACGCCUGUc -3'
miRNA:   3'- -UGUCGuc-GUGUUgauGUUUGUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.