Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 15466 | 0.67 | 0.869518 |
|
Target: 5'- -gGGCAGCAUacgcagcuuugaugGACUcCAu-CACCUGCc -3' miRNA: 3'- ugUCGUCGUG--------------UUGAuGUuuGUGGACG- -5' |
|||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 36615 | 0.67 | 0.872098 |
|
Target: 5'- gAUAGCGGCAUuuuauGCUGCAGA-GCUUGa -3' miRNA: 3'- -UGUCGUCGUGu----UGAUGUUUgUGGACg -5' |
|||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 39196 | 0.67 | 0.888611 |
|
Target: 5'- cGCGGCcuGUcCAGCUACuuGCgGCCUGUc -3' miRNA: 3'- -UGUCGu-CGuGUUGAUGuuUG-UGGACG- -5' |
|||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 10427 | 0.67 | 0.888611 |
|
Target: 5'- uGCuGCGGCuacagACAAUgugGCcgucguAGCGCCUGCg -3' miRNA: 3'- -UGuCGUCG-----UGUUGa--UGu-----UUGUGGACG- -5' |
|||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 38667 | 0.66 | 0.911052 |
|
Target: 5'- -gAGCGGCAC-ACUcaACAAGUACCgccGCa -3' miRNA: 3'- ugUCGUCGUGuUGA--UGUUUGUGGa--CG- -5' |
|||||||
| 28219 | 3' | -48.9 | NC_005891.1 | + | 8782 | 0.72 | 0.610173 |
|
Target: 5'- gUAGuCGGCGCucuugcuACUACGAACGCC-GCg -3' miRNA: 3'- uGUC-GUCGUGu------UGAUGUUUGUGGaCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home