miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2822 5' -56.7 NC_001491.2 + 146800 0.66 0.891311
Target:  5'- gUCGGagcccagGCGGuGGGUAgggucAGAG-UCCCCg -3'
miRNA:   3'- -AGCCgaa----CGCC-UCCAU-----UCUCgAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 79089 0.66 0.884519
Target:  5'- aCGGUUUGgGGuGGGUAGGugcgagggucuGGCUgUCCg -3'
miRNA:   3'- aGCCGAACgCC-UCCAUUC-----------UCGAgGGG- -5'
2822 5' -56.7 NC_001491.2 + 130949 0.66 0.877505
Target:  5'- cCGGUaccccaUUGCGcaucagccGAGuGUGAGuAGUUCCCCg -3'
miRNA:   3'- aGCCG------AACGC--------CUC-CAUUC-UCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 48936 0.66 0.862833
Target:  5'- cCGGCUgccaGCcuccGGUAAGGGCacaUCCCCc -3'
miRNA:   3'- aGCCGAa---CGccu-CCAUUCUCG---AGGGG- -5'
2822 5' -56.7 NC_001491.2 + 1288 0.67 0.855185
Target:  5'- cUGGCU-GCGGGGGgagaugGGGgccaGGCUCUCUc -3'
miRNA:   3'- aGCCGAaCGCCUCCa-----UUC----UCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 81109 0.67 0.831067
Target:  5'- gCGGCUgcguagGCGGcGGUGA-AGCccacCCCCa -3'
miRNA:   3'- aGCCGAa-----CGCCuCCAUUcUCGa---GGGG- -5'
2822 5' -56.7 NC_001491.2 + 124522 0.67 0.831067
Target:  5'- cCaGCUucaUGCGGcuGGaucuccAGAGCUCCCCu -3'
miRNA:   3'- aGcCGA---ACGCCu-CCau----UCUCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 116156 0.67 0.823508
Target:  5'- gCGGCc-GCGGAGG--GGAGCcuucagacccugccgCCCCu -3'
miRNA:   3'- aGCCGaaCGCCUCCauUCUCGa--------------GGGG- -5'
2822 5' -56.7 NC_001491.2 + 146364 0.67 0.82266
Target:  5'- cCGGCcacgGCGGcGaGUGAGuccGGCcUCCCCg -3'
miRNA:   3'- aGCCGaa--CGCCuC-CAUUC---UCG-AGGGG- -5'
2822 5' -56.7 NC_001491.2 + 136326 0.67 0.82266
Target:  5'- gCGGCUcagccuuugGgGGAGGU-AGAGUUUCCa -3'
miRNA:   3'- aGCCGAa--------CgCCUCCAuUCUCGAGGGg -5'
2822 5' -56.7 NC_001491.2 + 118126 0.68 0.805338
Target:  5'- cUCGGCcuccccggGCGGAGGguccccGGCaCCCCg -3'
miRNA:   3'- -AGCCGaa------CGCCUCCauuc--UCGaGGGG- -5'
2822 5' -56.7 NC_001491.2 + 61404 0.68 0.796439
Target:  5'- aUCuGCg-GCGGcuAGGau-GAGCUCCCCg -3'
miRNA:   3'- -AGcCGaaCGCC--UCCauuCUCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 147090 0.68 0.794642
Target:  5'- aCGGUgggccacagggGCGGcAGGgucugAAG-GCUCCCCu -3'
miRNA:   3'- aGCCGaa---------CGCC-UCCa----UUCuCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 52939 0.68 0.787394
Target:  5'- cUGGCUggccaUGCgaaaGGcGGUGAGGGCgcgaaUCCCCa -3'
miRNA:   3'- aGCCGA-----ACG----CCuCCAUUCUCG-----AGGGG- -5'
2822 5' -56.7 NC_001491.2 + 123492 0.68 0.77821
Target:  5'- gCGGCUgcgugGCGGGGGaacagcucGGGCUCggcgCCCg -3'
miRNA:   3'- aGCCGAa----CGCCUCCauu-----CUCGAG----GGG- -5'
2822 5' -56.7 NC_001491.2 + 108078 0.68 0.768897
Target:  5'- cCGGCgugUGUcgucuccccGGcgccAGGUGagacaGGAGCUCCCCc -3'
miRNA:   3'- aGCCGa--ACG---------CC----UCCAU-----UCUCGAGGGG- -5'
2822 5' -56.7 NC_001491.2 + 122274 0.68 0.759463
Target:  5'- cCGGCgaGCGcuuuuGGUGGGAcGCUCaCCCu -3'
miRNA:   3'- aGCCGaaCGCcu---CCAUUCU-CGAG-GGG- -5'
2822 5' -56.7 NC_001491.2 + 125583 0.69 0.730527
Target:  5'- gCGGCggccGuCGGAGGgggGGGAuGCgcgCCCCg -3'
miRNA:   3'- aGCCGaa--C-GCCUCCa--UUCU-CGa--GGGG- -5'
2822 5' -56.7 NC_001491.2 + 147048 0.69 0.720701
Target:  5'- gCGGCc-GCGGAGccggagAAGGGCUCgCCg -3'
miRNA:   3'- aGCCGaaCGCCUCca----UUCUCGAGgGG- -5'
2822 5' -56.7 NC_001491.2 + 145594 0.7 0.700832
Target:  5'- uUCGGacgcuggucCUUGgGGAgccGGUGAGGGCUCcggCCCg -3'
miRNA:   3'- -AGCC---------GAACgCCU---CCAUUCUCGAG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.