miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 41019 0.71 0.99902
Target:  5'- aUAAUCUUUUAAUACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 41847 0.72 0.996863
Target:  5'- uUAACCCUUUAACAUCUAAaCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 41978 0.73 0.991743
Target:  5'- uUAAUUgUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGgAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 42103 0.84 0.667945
Target:  5'- uUAACCCUUUAACAUCUAAacuuGCUGUAUu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUU----CGACAUAu -5'
28250 3' -44.6 NC_005902.1 + 42234 0.79 0.877259
Target:  5'- uUAACCUcUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGaAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 42976 0.82 0.755516
Target:  5'- -uACCCUUUAACAUCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 43522 0.66 0.999998
Target:  5'- uUAACCUUUUAACAUCUAAcCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 43915 0.67 0.999994
Target:  5'- -uACUCUUUAACACCUaAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGA-UUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 44013 0.82 0.776335
Target:  5'- -uACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 45077 0.82 0.776335
Target:  5'- -uACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 46931 0.74 0.983682
Target:  5'- uUAACCUgUUAAUACCUAAGCUaUAUGc -3'
miRNA:   3'- -AUUGGGaAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 47184 0.73 0.993902
Target:  5'- ---aCCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- auugGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 47232 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48109 0.76 0.956012
Target:  5'- -uACCCUUUAACAUUUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48161 0.66 0.999999
Target:  5'- uUAACCCUUUAACuCCUAAaguauuaucaaugauGCUuUGUAu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---------------CGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48250 0.81 0.816002
Target:  5'- uUAAUCCUUUAACACUUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48376 0.88 0.459905
Target:  5'- uUAACCCUUUAACACCUAAGUuaUGUAc- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCG--ACAUau -5'
28250 3' -44.6 NC_005902.1 + 48402 0.69 0.999857
Target:  5'- gAACCCUUUAACuCCUaAAGUaucauugaUGUAUGa -3'
miRNA:   3'- aUUGGGAAAUUGuGGA-UUCG--------ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 49433 0.73 0.991743
Target:  5'- -uACCUUUUAACACCUAAGU--UAUAa -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 49951 0.77 0.936935
Target:  5'- -uACCCUUUAACuCCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGuGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.