miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 28927 0.66 0.999997
Target:  5'- -uACCCUUUAAauCCUAAGCU-UAUAc -3'
miRNA:   3'- auUGGGAAAUUguGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 28968 0.66 0.999998
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 29086 0.71 0.99852
Target:  5'- uUAAUCCUUUAAUAUUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 29209 0.86 0.566909
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 29608 0.76 0.956012
Target:  5'- -uACCCUUUAACAUUUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 30794 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 31086 0.69 0.999891
Target:  5'- -cACCUUUUAACACCcAAGCUa---- -3'
miRNA:   3'- auUGGGAAAUUGUGGaUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 31415 0.84 0.690286
Target:  5'- -uACCCUUUAAUACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 34811 0.87 0.512259
Target:  5'- uUAACCCUUUAACACCUAAGUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 34870 0.66 0.999997
Target:  5'- uUAACCCUUUAAUuCCUAAGgCUuUAa- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUC-GAcAUau -5'
28250 3' -44.6 NC_005902.1 + 36093 0.91 0.338771
Target:  5'- uUAACCCUUUAACACCUAAGgUGUGg- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCgACAUau -5'
28250 3' -44.6 NC_005902.1 + 36159 0.77 0.936935
Target:  5'- cAACCCuUUUAACAUCUAAGCUaUAUAu -3'
miRNA:   3'- aUUGGG-AAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 36796 0.77 0.94213
Target:  5'- uUAACCUUUUAACACUUAAGCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 36898 0.73 0.992887
Target:  5'- uUAGCCUUUUAACuCCUAAGgCUaGUAUAg -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUC-GA-CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 37767 0.73 0.992558
Target:  5'- -uAUCUUUUAACACCUAAGCUugcuaugcuuauuuGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGA--------------CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 39093 0.86 0.578038
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 39272 0.7 0.999367
Target:  5'- -uACCCUcUAACACCUAAaccaUGUAUAu -3'
miRNA:   3'- auUGGGAaAUUGUGGAUUcg--ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 40062 0.87 0.53389
Target:  5'- uUAACCCUUUAACACUUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 40666 0.77 0.947039
Target:  5'- uUAACCCUUUAACGuuUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUggAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 40966 0.84 0.679139
Target:  5'- -cACCCUUUAAUACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.