miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 16463 0.71 0.99852
Target:  5'- -uACCUUUUAACACCUAAacuauacacucGCaUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUU-----------CG-ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 16511 0.73 0.990457
Target:  5'- uUAACCCUgUAACACCUGAGauaUAUAg -3'
miRNA:   3'- -AUUGGGAaAUUGUGGAUUCgacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 16801 0.67 0.999976
Target:  5'- uUAACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5'
28250 3' -44.6 NC_005902.1 + 16875 0.79 0.8997
Target:  5'- -uAUCCUUUAACACCUAAGCUaUAUc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAu -5'
28250 3' -44.6 NC_005902.1 + 18748 0.82 0.744903
Target:  5'- -uACCCUUUAACACCUAAGUUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 18853 0.86 0.544827
Target:  5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 20058 0.75 0.975761
Target:  5'- uUAACCCUUUAACACaUAAGCcauauacaaacaagUGUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGgAUUCG--------------ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 20277 0.78 0.919616
Target:  5'- uUAAUCCUUUAACACCUAAGUUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 21167 0.78 0.919616
Target:  5'- --uCCCUUUAACACUUAAGCUaUAUAu -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 21308 0.76 0.963891
Target:  5'- -uACCUUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 22598 0.73 0.991621
Target:  5'- aUAGCCUUaggauuuaaagggUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGA-------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23253 0.93 0.283818
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23284 0.83 0.73417
Target:  5'- uUAAUCCUUUAAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23462 0.78 0.925679
Target:  5'- uUAGCCCUUUAACACCUAAuCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23606 0.78 0.925678
Target:  5'- -uACUCUUUAACACCUAAGCUa---- -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 23975 0.67 0.999991
Target:  5'- uUAAUCCUUUAACAUCUAAaCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 26257 0.67 0.999988
Target:  5'- -uACCCUUUAAUACUU-AGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAuUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 27644 0.71 0.998956
Target:  5'- gAugCCUuaggaguuaaagaaUUAAUACCUAGGCUGcUAUAu -3'
miRNA:   3'- aUugGGA--------------AAUUGUGGAUUCGAC-AUAU- -5'
28250 3' -44.6 NC_005902.1 + 28152 0.77 0.951665
Target:  5'- -uAUCUUUUAACACCUAAGCUaUAUAa -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 28789 0.66 0.999996
Target:  5'- -uAUCCUUUAACAUCUGuGCucuuuUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUuCG-----ACAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.