miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 87341 0.67 0.999993
Target:  5'- aUGACaCCUuaagaguuaaaggcUUAAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUG-GGA--------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 54988 0.67 0.999976
Target:  5'- uUAACCCUUUAACcCCUAAgGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5'
28250 3' -44.6 NC_005902.1 + 144145 0.67 0.999988
Target:  5'- uUAACUCUUUAAUACCUAAuCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 3002 0.67 0.999989
Target:  5'- uUAAUCCUucaguuuuuaaaauaUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGA---------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 174460 0.67 0.999994
Target:  5'- uUAAUCUUUUuACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAuUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 173175 0.67 0.999976
Target:  5'- uUAACCCcUUAACuCCUAAGUUaUAUAc -3'
miRNA:   3'- -AUUGGGaAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 61465 0.67 0.999988
Target:  5'- uUAACUCUUUAACACUaaauuauauaUAAGCaaGUGUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGG----------AUUCGa-CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 90590 0.67 0.999987
Target:  5'- aAGCCUUaggauuuaaagggUUAACACCUAAGCUu---- -3'
miRNA:   3'- aUUGGGA-------------AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 58224 0.67 0.999983
Target:  5'- -uACUCUUUAACACaUAAGCUaUAUAg -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 184588 0.67 0.999976
Target:  5'- -uAUgCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- auUGgGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23975 0.67 0.999991
Target:  5'- uUAAUCCUUUAACAUCUAAaCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 182934 0.67 0.999991
Target:  5'- ----aUUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auuggGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 98813 0.67 0.999991
Target:  5'- -uACCUUUUAACACUUAuGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUuCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 55127 0.67 0.999991
Target:  5'- -uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAu -3'
miRNA:   3'- auUGGGAAAUUguGGAUUCGA----------CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 151173 0.67 0.999994
Target:  5'- aAGCCUUaggaauuaaagggUUAACACCUAAGUUaUAUAu -3'
miRNA:   3'- aUUGGGA-------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 102202 0.67 0.999988
Target:  5'- uUAACCCUUUAACuCCUAAGa------ -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgacauau -5'
28250 3' -44.6 NC_005902.1 + 127469 0.67 0.999983
Target:  5'- -uACUCUUUAACACaUAAGCUaUAUAg -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 95403 0.67 0.999976
Target:  5'- uUAAUCCUUUAACACCUAAaUUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 89958 0.67 0.999976
Target:  5'- uUAACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5'
28250 3' -44.6 NC_005902.1 + 143641 0.67 0.999976
Target:  5'- -uACCUUUUAACAUCUAAGU--UAUAa -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.