Results 21 - 40 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 3' | -44.6 | NC_005902.1 | + | 170697 | 0.86 | 0.56691 |
Target: 5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 105939 | 0.86 | 0.544828 |
Target: 5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 48376 | 0.88 | 0.459905 |
Target: 5'- uUAACCCUUUAACACCUAAGUuaUGUAc- -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCG--ACAUau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 23253 | 0.93 | 0.283818 |
Target: 5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 54049 | 0.82 | 0.755517 |
Target: 5'- -uAUCCUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 97435 | 0.84 | 0.645461 |
Target: 5'- -uACCCUUUAACACCUAAGCUa---- -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 143015 | 0.87 | 0.53389 |
Target: 5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 50207 | 0.93 | 0.276569 |
Target: 5'- aUAACCCUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 50042 | 0.84 | 0.645461 |
Target: 5'- -uACCCUUUAACACCUAAGCUaUGUu -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGAcAUAu -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 1143 | 0.96 | 0.18493 |
Target: 5'- gAACCCUUUAAgACCUAAGCUGUAUAc -3' miRNA: 3'- aUUGGGAAAUUgUGGAUUCGACAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 145942 | 0.87 | 0.53389 |
Target: 5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 39093 | 0.86 | 0.578038 |
Target: 5'- uUAACUCUUUAACACCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 30794 | 0.87 | 0.53389 |
Target: 5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 128771 | 0.88 | 0.480522 |
Target: 5'- -uACCCUUUAACACCUAAGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 91854 | 0.93 | 0.291216 |
Target: 5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 97172 | 0.93 | 0.283818 |
Target: 5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 161770 | 0.81 | 0.796528 |
Target: 5'- uUAAUCCUUUAACACCUAAGgUGUc-- -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCgACAuau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 45077 | 0.82 | 0.776335 |
Target: 5'- -uACCUUUUAACACCUAAGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 146423 | 0.83 | 0.701376 |
Target: 5'- uUAAUCCUUUAACACCUAAGCUa---- -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 42103 | 0.84 | 0.667945 |
Target: 5'- uUAACCCUUUAACAUCUAAacuuGCUGUAUu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUU----CGACAUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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