miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 23975 0.67 0.999991
Target:  5'- uUAAUCCUUUAACAUCUAAaCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 95403 0.67 0.999976
Target:  5'- uUAAUCCUUUAACACCUAAaUUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 87341 0.67 0.999993
Target:  5'- aUGACaCCUuaagaguuaaaggcUUAAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUG-GGA--------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 89958 0.67 0.999976
Target:  5'- uUAACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5'
28250 3' -44.6 NC_005902.1 + 184588 0.67 0.999976
Target:  5'- -uAUgCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- auUGgGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 63360 0.67 0.999976
Target:  5'- uUAACUCUUUAACAUCUcuAAGCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGA--UUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 61465 0.67 0.999988
Target:  5'- uUAACUCUUUAACACUaaauuauauaUAAGCaaGUGUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGG----------AUUCGa-CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 43915 0.67 0.999994
Target:  5'- -uACUCUUUAACACCUaAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGA-UUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 78210 0.68 0.999955
Target:  5'- --uUUCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 101125 0.68 0.999918
Target:  5'- uUAACCCUUUAAaUAUUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUU-GUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 67357 0.68 0.999951
Target:  5'- uUAACCCUUUAACcCCUAacuauauauaaauaAGUgUGUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAU--------------UCG-ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 83732 0.68 0.999918
Target:  5'- -uACCUUUUAACACUUAAGUgaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 50461 0.68 0.999916
Target:  5'- uUAGCCUUUUAAUACCUaaaauauauaaauGAGUgUGUGUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGA-------------UUCG-ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 101069 0.68 0.999939
Target:  5'- uUAACCCUUUAACAUCUAcaCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 157172 0.68 0.999955
Target:  5'- -uGCCCUaggaaUUAAUACCUAAGUUaUAUAc -3'
miRNA:   3'- auUGGGA-----AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 177586 0.68 0.999918
Target:  5'- uUAACCUUUUAACACCUAAaCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcauau -5'
28250 3' -44.6 NC_005902.1 + 144981 0.68 0.999918
Target:  5'- uUAAUCCUUUAAUACUaAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGaUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 127776 0.68 0.999967
Target:  5'- -uACCUUUUAACACUgAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGaUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 165715 0.69 0.999813
Target:  5'- -uAUCUaUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGaAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 76020 0.69 0.999857
Target:  5'- gUAACCCUUUAACuCCUAAG--GUAUu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgaCAUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.