miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 18853 0.86 0.544827
Target:  5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 156427 0.86 0.544827
Target:  5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 162531 0.86 0.544827
Target:  5'- uUAACCCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 105939 0.86 0.544828
Target:  5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 172602 0.86 0.544828
Target:  5'- uUAACCCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 169508 0.86 0.555837
Target:  5'- uUAACUCUUUAACACCUGAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 29209 0.86 0.566909
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 135809 0.86 0.566909
Target:  5'- uUAGCUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 158225 0.86 0.566909
Target:  5'- uUAACCCUUUAAUGCCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 117726 0.86 0.566909
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUGc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 15420 0.86 0.566909
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 170697 0.86 0.56691
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 55062 0.86 0.578038
Target:  5'- -uACCCUUUAACACCUAAGUucacuUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCG-----ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 39093 0.86 0.578038
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 80732 0.85 0.634195
Target:  5'- aAACUCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- aUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 81836 0.84 0.645461
Target:  5'- --uCCCUUUAACACCUAAGCUaUAUAa -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 50042 0.84 0.645461
Target:  5'- -uACCCUUUAACACCUAAGCUaUGUu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAu -5'
28250 3' -44.6 NC_005902.1 + 97435 0.84 0.645461
Target:  5'- -uACCCUUUAACACCUAAGCUa---- -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 114544 0.84 0.656714
Target:  5'- --cCCCUUUAACACCUAGGCUaUAUAa -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 76082 0.84 0.667944
Target:  5'- uUAACCCUUUAAgACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUgUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.