Results 41 - 60 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 3' | -44.6 | NC_005902.1 | + | 63360 | 0.67 | 0.999976 |
Target: 5'- uUAACUCUUUAACAUCUcuAAGCUa---- -3' miRNA: 3'- -AUUGGGAAAUUGUGGA--UUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 54988 | 0.67 | 0.999976 |
Target: 5'- uUAACCCUUUAACcCCUAAgGCa----- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 89958 | 0.67 | 0.999976 |
Target: 5'- uUAACCCUUUAACuCCUAAgGCa----- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 49979 | 0.67 | 0.999976 |
Target: 5'- uUAACCCUUUAACuCCUAAgGCa----- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 143641 | 0.67 | 0.999976 |
Target: 5'- -uACCUUUUAACAUCUAAGU--UAUAa -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 95403 | 0.67 | 0.999976 |
Target: 5'- uUAAUCCUUUAACACCUAAaUUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 184588 | 0.67 | 0.999976 |
Target: 5'- -uAUgCUUUAACACUUAAGCUaUAUAc -3' miRNA: 3'- auUGgGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 173175 | 0.67 | 0.999976 |
Target: 5'- uUAACCCcUUAACuCCUAAGUUaUAUAc -3' miRNA: 3'- -AUUGGGaAAUUGuGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 127776 | 0.68 | 0.999967 |
Target: 5'- -uACCUUUUAACACUgAAGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGaUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 78210 | 0.68 | 0.999955 |
Target: 5'- --uUUCUUUAACAUCUAAGCUaUAUAc -3' miRNA: 3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 157172 | 0.68 | 0.999955 |
Target: 5'- -uGCCCUaggaaUUAAUACCUAAGUUaUAUAc -3' miRNA: 3'- auUGGGA-----AAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 67357 | 0.68 | 0.999951 |
Target: 5'- uUAACCCUUUAACcCCUAacuauauauaaauaAGUgUGUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGuGGAU--------------UCG-ACAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 101069 | 0.68 | 0.999939 |
Target: 5'- uUAACCCUUUAACAUCUAcaCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 83732 | 0.68 | 0.999918 |
Target: 5'- -uACCUUUUAACACUUAAGUgaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 144981 | 0.68 | 0.999918 |
Target: 5'- uUAAUCCUUUAAUACUaAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGaUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 177586 | 0.68 | 0.999918 |
Target: 5'- uUAACCUUUUAACACCUAAaCUa---- -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUcGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 101125 | 0.68 | 0.999918 |
Target: 5'- uUAACCCUUUAAaUAUUUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUU-GUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 50461 | 0.68 | 0.999916 |
Target: 5'- uUAGCCUUUUAAUACCUaaaauauauaaauGAGUgUGUGUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGA-------------UUCG-ACAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 31086 | 0.69 | 0.999891 |
Target: 5'- -cACCUUUUAACACCcAAGCUa---- -3' miRNA: 3'- auUGGGAAAUUGUGGaUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 6303 | 0.69 | 0.999888 |
Target: 5'- uUAACCCUUUAAUcuuuaagACCUAAGCcaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUG-------UGGAUUCGacAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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