miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 156335 0.69 0.999857
Target:  5'- cUAACUUUUUAACAUUUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 69227 0.69 0.999857
Target:  5'- ---aCCUUUAACACCUAAGUa----- -3'
miRNA:   3'- auugGGAAAUUGUGGAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 12539 0.69 0.999857
Target:  5'- uUAACCCUUUAAUACCUAAaUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 175935 0.69 0.999857
Target:  5'- uUAACCCUUUAACuCCUAAG--GUAUc -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgaCAUAu -5'
28250 3' -44.6 NC_005902.1 + 137493 0.69 0.999857
Target:  5'- uUAACCCUUUAAUACCUAAaUUaUAUGa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 179694 0.69 0.999857
Target:  5'- -uAUCCUUUAAaACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUgUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48402 0.69 0.999857
Target:  5'- gAACCCUUUAACuCCUaAAGUaucauugaUGUAUGa -3'
miRNA:   3'- aUUGGGAAAUUGuGGA-UUCG--------ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 76020 0.69 0.999857
Target:  5'- gUAACCCUUUAACuCCUAAG--GUAUu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgaCAUAu -5'
28250 3' -44.6 NC_005902.1 + 157839 0.69 0.999853
Target:  5'- uUAACUUuucaauaUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGG-------AAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 165715 0.69 0.999813
Target:  5'- -uAUCUaUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGaAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 151284 0.69 0.999758
Target:  5'- uUAAUCU--UAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGaaAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 112069 0.69 0.999718
Target:  5'- -uACCCUUUAACACCUAaaucauauauaaaaaAGUgugGUGa- -3'
miRNA:   3'- auUGGGAAAUUGUGGAU---------------UCGa--CAUau -5'
28250 3' -44.6 NC_005902.1 + 111167 0.69 0.999689
Target:  5'- uUAACCCUUUAACuCCUAAugcGUUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 5112 0.69 0.999689
Target:  5'- -cACUCUUUAACAUCUAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 5041 0.69 0.999689
Target:  5'- uUAGCCCUUUAACuCCUAAagcGUUGUc-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 182559 0.69 0.999689
Target:  5'- -cACUCgauuUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGa---AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 184442 0.69 0.999689
Target:  5'- aAACCCUUUAACuCUUAAGgUGUu-- -3'
miRNA:   3'- aUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 98624 0.7 0.999603
Target:  5'- uUAACCUUUUAcccccuucAUACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAU--------UGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 7599 0.7 0.999563
Target:  5'- -cACCCUUUAACACCUAAauuauauacucauUUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUc------------GACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 10057 0.7 0.999497
Target:  5'- uUAACCCUUUAAC-UCUGcGCUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUuCGACAuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.