miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 172602 0.86 0.544828
Target:  5'- uUAACCCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 170847 0.75 0.979161
Target:  5'- -uACCCUUUAACAUgUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 170697 0.86 0.56691
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 170529 0.72 0.996863
Target:  5'- uUAACCUUUUAACACCUAAaCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 169508 0.86 0.555837
Target:  5'- uUAACUCUUUAACACCUGAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 169439 1 0.114387
Target:  5'- uUAACCCUUUAACACUUAAGCUGUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 169120 0.93 0.283817
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 167248 0.7 0.99921
Target:  5'- -uACUUUUUAACACCUAAGUUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 167155 0.84 0.679139
Target:  5'- --uCCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 166126 0.78 0.931452
Target:  5'- -uACCCUUUAAUACUUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 166071 0.67 0.999994
Target:  5'- uUAACCCUUUAACuuCUAAGaUGUc-- -3'
miRNA:   3'- -AUUGGGAAAUUGugGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 165944 0.72 0.996863
Target:  5'- -cACCUUUUAAUACUUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 165886 0.88 0.480522
Target:  5'- -uACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 165876 0.71 0.998199
Target:  5'- uUAACCCUUUAACuuCUAAGgUGUc-- -3'
miRNA:   3'- -AUUGGGAAAUUGugGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 165715 0.69 0.999813
Target:  5'- -uAUCUaUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGaAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 163444 0.66 0.999999
Target:  5'- uUAACCCUUUAAauCCUAAGgCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUguGGAUUC-GAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 163383 0.78 0.906624
Target:  5'- uUAACCCuUUUAACAUCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGG-AAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 162752 0.72 0.997378
Target:  5'- --uCCCUUUAACAUUUAAGCUaUAUGc -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 162531 0.86 0.544827
Target:  5'- uUAACCCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 162389 0.8 0.834666
Target:  5'- --uCCCUUUAACACCUAAGCUa---- -3'
miRNA:   3'- auuGGGAAAUUGUGGAUUCGAcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.