miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 184858 1.06 0.051737
Target:  5'- uUAACCCUUUAACACCUAAGCUGUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 184746 0.74 0.987418
Target:  5'- uUAAUCCU--AACACCUGAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAaaUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 184588 0.67 0.999976
Target:  5'- -uAUgCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- auUGgGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 184442 0.69 0.999689
Target:  5'- aAACCCUUUAACuCUUAAGgUGUu-- -3'
miRNA:   3'- aUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 182934 0.67 0.999991
Target:  5'- ----aUUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auuggGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 182559 0.69 0.999689
Target:  5'- -cACUCgauuUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGa---AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 180880 0.81 0.82544
Target:  5'- uUAACCCUUUAACAUCUAAGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 180617 0.78 0.919616
Target:  5'- uUAAUUCUUUAACACCUAAGCU-UAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 180347 0.7 0.999497
Target:  5'- uUAAUUCUUUAACcCCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 179807 0.78 0.925678
Target:  5'- uUAACCCUUUAACAaCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUgGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 179694 0.69 0.999857
Target:  5'- -uAUCCUUUAAaACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUgUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 177586 0.68 0.999918
Target:  5'- uUAACCUUUUAACACCUAAaCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcauau -5'
28250 3' -44.6 NC_005902.1 + 177324 0.8 0.852437
Target:  5'- -uAUCCUUUAACACCUAAGUuuauuUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCG-----ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 175935 0.69 0.999857
Target:  5'- uUAACCCUUUAACuCCUAAG--GUAUc -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgaCAUAu -5'
28250 3' -44.6 NC_005902.1 + 175611 0.77 0.94213
Target:  5'- -uACCCUUUAAUACgUAAGCcGUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGaCAUAU- -5'
28250 3' -44.6 NC_005902.1 + 175513 0.66 0.999998
Target:  5'- uUAACCCUUUAACuCUUAAGaUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 174588 0.75 0.979161
Target:  5'- gUGACCgagUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGga-AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 174460 0.67 0.999994
Target:  5'- uUAAUCUUUUuACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAuUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 173175 0.67 0.999976
Target:  5'- uUAACCCcUUAACuCCUAAGUUaUAUAc -3'
miRNA:   3'- -AUUGGGaAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 172814 0.88 0.470156
Target:  5'- -uACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.