miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 164731 0.67 0.999984
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 182607 0.67 0.999984
Target:  5'- -aUAUAaGGCUUAGuUUUUAAAGGGUu -3'
miRNA:   3'- acAUAUgUCGAAUCcAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48608 0.67 0.999984
Target:  5'- aGUGUAUAGCUUAGaUgUUAAAaGGUg -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 90096 0.67 0.999984
Target:  5'- aGUAUAUAaCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUcGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 73971 0.66 0.999992
Target:  5'- -aUAUAUgaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGucGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 63270 0.68 0.99987
Target:  5'- aUGUucAUAUAGCUUaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACA--UAUGUCGAA--UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157113 0.69 0.99978
Target:  5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 130973 0.71 0.998385
Target:  5'- -aUAUACAagugaaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUc-----GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94033 0.71 0.998385
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- acAUAUGUCGAAUCCAg---------AAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 137662 0.71 0.998385
Target:  5'- aGUAcAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157064 0.71 0.998673
Target:  5'- uUGUGUAUAGCUUAGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 159783 0.7 0.998915
Target:  5'- aGUAUAUAGCUaAGua-UUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAaUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 38452 0.7 0.999119
Target:  5'- -aUAUAUAGCUUAGGUgUUAcAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUuUCCca -5'
28250 5' -45.3 NC_005902.1 + 138857 0.7 0.99943
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAGGu- -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 84911 0.69 0.999546
Target:  5'- aGUAUAUAGCUUAaauaUUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcca-GAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 175654 0.69 0.999718
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 140151 0.69 0.99978
Target:  5'- -uUAUACAGUucagaaaucUUAGGUUUaAGAGGGUu -3'
miRNA:   3'- acAUAUGUCG---------AAUCCAGAaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55098 0.69 0.99978
Target:  5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.