miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 167291 0.82 0.750732
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 31459 0.82 0.771278
Target:  5'- aGUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 140962 0.81 0.781339
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 110137 0.81 0.781339
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 162433 0.81 0.791244
Target:  5'- gUGUGUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 52366 0.81 0.791244
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 99650 0.81 0.791244
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 6346 0.81 0.791244
Target:  5'- -aUAUAUAGCUUAGGUUUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAGAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 23506 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 80097 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 104866 0.81 0.800983
Target:  5'- -aUAUAUAGCUUAGGUagguaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAg----AAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29610 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 97476 0.81 0.810543
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 134191 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 136001 0.81 0.810543
Target:  5'- ----cAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acauaUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 124420 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 100700 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 30828 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 130911 0.81 0.819914
Target:  5'- uUGUuUAUAGCUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACAuAUGUCGAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 146763 0.81 0.819915
Target:  5'- aGUAUAUacauGGUUUAGGUgUUAGAGGGUa -3'
miRNA:   3'- aCAUAUG----UCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.