miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 179726 0.89 0.401899
Target:  5'- uUGUAUAUGGCUUAGGUCUuaaagauUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAGA-------AUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 49995 0.89 0.402823
Target:  5'- aGUAUAUAGCUUAGGagUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 122804 0.88 0.440863
Target:  5'- aGUAUAUAGCUUAGGggUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 13226 0.88 0.440863
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 104205 0.88 0.450689
Target:  5'- -uUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88603 0.87 0.491138
Target:  5'- aGUaaGUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCA--UAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 16919 0.87 0.501513
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 54378 0.87 0.501513
Target:  5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 125576 0.87 0.501513
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 135831 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 162785 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88866 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 23652 0.86 0.543909
Target:  5'- aGUAUGUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 39306 0.86 0.554698
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 87405 0.86 0.554698
Target:  5'- uUGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgaAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 127425 0.86 0.554698
Target:  5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 114438 0.85 0.598396
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 27812 0.85 0.598396
Target:  5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 142025 0.82 0.74027
Target:  5'- gUGUAUAUAGCUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 78119 0.82 0.74027
Target:  5'- aGUAUAUAGCUUAGaGUUUaUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUC-CAGA-AUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.