miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 20153 0.96 0.188896
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 22594 0.72 0.996656
Target:  5'- -uUAUAUAGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 23506 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 23652 0.86 0.543909
Target:  5'- aGUAUGUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 27812 0.85 0.598396
Target:  5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 27921 0.66 0.999996
Target:  5'- uUGUAUAUAGCUUAaGUaUUAAAGGu- -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 28812 0.95 0.204752
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29135 0.77 0.93213
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29255 0.72 0.995338
Target:  5'- aGUAUAUAGCUUAGGUgUU--AGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAuuUCCca -5'
28250 5' -45.3 NC_005902.1 + 29494 0.8 0.838051
Target:  5'- -aUAUAUAGCUUAGGUgUUaAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAA-UUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29610 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 30828 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 31459 0.82 0.771278
Target:  5'- aGUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 36357 0.74 0.981227
Target:  5'- -aUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 36842 0.67 0.999958
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 38452 0.7 0.999119
Target:  5'- -aUAUAUAGCUUAGGUgUUAcAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUuUCCca -5'
28250 5' -45.3 NC_005902.1 + 39306 0.86 0.554698
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 39612 0.75 0.973557
Target:  5'- aGUGaauUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAU---AUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 40095 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 42267 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.