miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 167291 0.82 0.750732
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 27812 0.85 0.598396
Target:  5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 122804 0.88 0.440863
Target:  5'- aGUAUAUAGCUUAGGggUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 28812 0.95 0.204752
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 130911 0.81 0.819914
Target:  5'- uUGUuUAUAGCUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACAuAUGUCGAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 6346 0.81 0.791244
Target:  5'- -aUAUAUAGCUUAGGUUUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAGAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 127425 0.86 0.554698
Target:  5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 42267 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 162433 0.81 0.791244
Target:  5'- gUGUGUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 20153 0.96 0.188896
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 114438 0.85 0.598396
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 110137 0.81 0.781339
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 54378 0.87 0.501513
Target:  5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 13226 0.88 0.440863
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 1180 0.91 0.325252
Target:  5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 80777 0.95 0.204752
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 6230 0.8 0.846796
Target:  5'- aGUAUAUAGCUUAGuUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 10428 0.8 0.829087
Target:  5'- uUGUAUACGGCUUAcGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 30828 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29610 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.