Results 1 - 20 of 196 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 109956 | 0.96 | 0.183855 |
Target: 5'- -aUAUAUAGCUUAGGUCUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAGAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 127425 | 0.86 | 0.554698 |
Target: 5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 27812 | 0.85 | 0.598396 |
Target: 5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 67748 | 0.66 | 0.999997 |
Target: 5'- aGUAUAUAGCUUAaGUgUUAAAaGGUu -3' miRNA: 3'- aCAUAUGUCGAAUcCAgAAUUUcCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 80777 | 0.95 | 0.204752 |
Target: 5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 154624 | 0.92 | 0.301984 |
Target: 5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 1180 | 0.91 | 0.325252 |
Target: 5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 67032 | 0.91 | 0.349826 |
Target: 5'- aGUAUAUAGCUUAGGagUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 13226 | 0.88 | 0.440863 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 39306 | 0.86 | 0.554698 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 16919 | 0.87 | 0.501513 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 122804 | 0.88 | 0.440863 |
Target: 5'- aGUAUAUAGCUUAGGggUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 20153 | 0.96 | 0.188896 |
Target: 5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 54378 | 0.87 | 0.501513 |
Target: 5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 42267 | 0.96 | 0.194058 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 131154 | 0.91 | 0.349826 |
Target: 5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 125576 | 0.87 | 0.501513 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 114438 | 0.85 | 0.598396 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 28812 | 0.95 | 0.204752 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
|||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 136087 | 0.92 | 0.31735 |
Target: 5'- uUGUAUAUAGCUUAGGagUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home