miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 140151 0.69 0.99978
Target:  5'- -uUAUACAGUucagaaaucUUAGGUUUaAGAGGGUu -3'
miRNA:   3'- acAUAUGUCG---------AAUCCAGAaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 154952 0.69 0.999718
Target:  5'- uUGUucAUAGCUUGGGUgUUAAAaGGUg -3'
miRNA:   3'- -ACAuaUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 149948 0.69 0.999718
Target:  5'- ----cACAcCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acauaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 175654 0.69 0.999718
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 84911 0.69 0.999546
Target:  5'- aGUAUAUAGCUUAaauaUUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcca-GAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 138857 0.7 0.99943
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAGGu- -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 162630 0.7 0.999289
Target:  5'- uUGUAUAUAGCUUGGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 184631 0.7 0.999289
Target:  5'- cGUAUAUAGCUUAGGggUUAAAaaGGUg -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUc-CCA- -5'
28250 5' -45.3 NC_005902.1 + 38452 0.7 0.999119
Target:  5'- -aUAUAUAGCUUAGGUgUUAcAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUuUCCca -5'
28250 5' -45.3 NC_005902.1 + 95982 0.7 0.998915
Target:  5'- uUGUAUAUAaCUUAGGUgUU-AAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAuUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 159783 0.7 0.998915
Target:  5'- aGUAUAUAGCUaAGua-UUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAaUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157064 0.71 0.998673
Target:  5'- uUGUGUAUAGCUUAGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 68311 0.71 0.998672
Target:  5'- uUGcAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACaUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 50229 0.71 0.998672
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGa-- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 5422 0.71 0.998672
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGa-- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 137662 0.71 0.998385
Target:  5'- aGUAcAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 130973 0.71 0.998385
Target:  5'- -aUAUACAagugaaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUc-----GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94033 0.71 0.998385
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- acAUAUGUCGAAUCCAg---------AAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 69159 0.71 0.997651
Target:  5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.